Factsheet for HORVU2Hr1G020570.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G327200.1	Wheat	cytosol	99.4	99.4
TraesCS1B01G340600.1	Wheat	golgi, plastid	99.4	99.4
TraesCS1D01G329300.1	Wheat	cytosol	98.39	98.39
HORVU1Hr1G077990.4	Barley	cytosol	99.4	98.02
KRH09713	Soybean	cytosol	83.9	83.57
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	83.1	83.43
KRH44479	Soybean	cytosol	82.7	83.03
Solyc12g042740.1.1	Tomato	cytosol	83.3	82.97
VIT_09s0002g07290.t01	Wine grape	cytosol	82.5	82.83
KRH23593	Soybean	cytosol	83.3	82.8
PGSC0003DMT400073698	Potato	cytosol	82.5	82.16
PGSC0003DMT400001674	Potato	cytosol	81.89	81.89
Os05t0509500-01	Rice	plasma membrane	78.87	81.16
CDY16472	Canola	cytosol	63.78	80.87
HORVU3Hr1G075590.1	Barley	cytosol	31.19	80.73
AT1G48900.1	Thale cress	cytosol	79.68	80.0
CDX77276	Canola	cytosol	79.28	79.44
Bra014161.1-P	Field mustard	cytosol	79.28	79.44
HORVU6Hr1G029680.1	Barley	cytosol	30.58	79.17
HORVU5Hr1G019120.2	Barley	cytosol	30.58	79.17
CDY40616	Canola	cytosol	78.27	78.59
Bra018760.1-P	Field mustard	cytosol	78.27	78.59
CDX93702	Canola	cytosol	78.27	78.59
HORVU2Hr1G125480.2	Barley	cytosol	30.99	78.17
HORVU2Hr1G097520.1	Barley	cytosol	34.61	77.48
HORVU7Hr1G036330.1	Barley	cytosol	37.02	76.35
AT1G15310.1	Thale cress	cytosol	73.04	75.78
EES19782	Sorghum	cytosol	72.43	74.69
Bra026145.1-P	Field mustard	cytosol	71.43	74.11
CDY39632	Canola	cytosol	71.43	73.96
CDY36546	Canola	cytosol	71.23	73.9
Zm00001d038661_P001	Maize	cytosol	71.03	73.24
AT5G49500.1	Thale cress	cytosol	71.43	71.43
Solyc03g116810.2.1	Tomato	nucleus	81.89	68.98
CDY10656	Canola	cytosol	27.16	68.88
KXG37974	Sorghum	cytosol	60.56	67.49
KXG37972	Sorghum	cytosol	60.36	67.26
KXG34125	Sorghum	cytosol	59.15	59.15
GSMUA_Achr9P25680_001	Banana	cytosol	50.91	58.03
CDY17067	Canola	cytosol, nucleus	27.16	41.8
CDY46694	Canola	cytosol	25.96	41.61
AT5G66970.1	Thale cress	cytosol	14.49	41.14
Bra014039.1-P	Field mustard	cytosol	32.19	38.93
HORVU4Hr1G021950.4	Barley	plastid	27.36	24.5
HORVU4Hr1G021960.1	Barley	plastid	25.15	22.28
HORVU3Hr1G110160.4	Barley	mitochondrion	16.9	21.05
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	16.9	13.27

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EMBL:AK356037
UniProt:F2CWN4	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312
GO:GO:0016787	GO:GO:0030529	GO:GO:0045047	GO:GO:0048500	EnsemblPlantsGene:HORVU2Hr1G020570	EnsemblPlants:HORVU2Hr1G020570.1
InterPro:IPR036891	HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978
ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962	SMART:SM00963
InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446
SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI0000135ED1
SEG:seg	:	:	:	:	:

Description

Signal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:F2CWN4]

Coordinates

chrchr2H:+:56708815..56713486

Molecular Weight (calculated)

54511.1 Da

IEP (calculated)

9.909

GRAVY (calculated)

-0.205

Length

497 amino acids

Sequence
(BLAST)

001: MVLAQLGGSI SRALAQMSNA TVIDEKVLGE CLNEISRALL QSDVQFKMVR DMQTNIRKIV NLETLAAGTN KRRIIQQAVF TELCNMLDPG KPAFTPKKGK
101: PSVVMFVGLQ GSGKTTTCTK YAYYHQRKGF KPSLVCADTF RAGAFDQLKQ NATKAKIPFY GSYMESDPVK IAVEGLERFR KENSDLIIID TSGRHKQEAA
201: LFEEMRQVAE ATKPDLVIFV MDGSIGQAAF DQAQAFKQSA SVGAVIITKL DGHAKGGGAL SAVAATKSPV IFIGTGEHID EFEIFDVKPF VSRLLGMGDL
301: SGLMDKIQDV MPADQQPELL AKLAEGTFTL RLLYEQFQNL LKMGPIGQVF SMLPGFSSEL MPKGHEKEGQ AKIKRYMTIM DSMTAAELDS TNPKLMTESR
401: IIRIARGSGR QIRDVTDMLE EYKRLAKMWS KMKGLKMPKN GKMSDLSQNL NIQQMTKALP PQVLKQMGGM GGLQALMKQM GGKDMSKMLG GMGLGGD

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.