Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
plastid: 27562633 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
27562633
doi
Bio-Tech Research Center, Shandong Academy of Agricultural Science, Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crop, Jinan, 250100, China., The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, 27 Shandanan Road, Jinan, Shandong 250100, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G327200.1 | Wheat | cytosol | 99.6 | 99.6 |
| HORVU2Hr1G020570.1 | Barley | plasma membrane | 99.4 | 99.4 |
| TraesCS1D01G329300.1 | Wheat | cytosol | 98.19 | 98.19 |
| HORVU1Hr1G077990.4 | Barley | cytosol | 98.79 | 97.42 |
| KRH09713 | Soybean | cytosol | 84.1 | 83.77 |
| KRH47429 | Soybean | cytosol, endoplasmic reticulum, nucleus | 83.3 | 83.64 |
| KRH44479 | Soybean | cytosol | 82.9 | 83.23 |
| Solyc12g042740.1.1 | Tomato | cytosol | 83.5 | 83.17 |
| KRH23593 | Soybean | cytosol | 83.5 | 83.0 |
| VIT_09s0002g07290.t01 | Wine grape | cytosol | 82.29 | 82.63 |
| PGSC0003DMT400073698 | Potato | cytosol | 82.7 | 82.36 |
| TraesCS1B01G340700.1 | Wheat | cytosol | 81.29 | 81.78 |
| PGSC0003DMT400001674 | Potato | cytosol | 81.69 | 81.69 |
| Os05t0509500-01 | Rice | plasma membrane | 78.67 | 80.95 |
| CDY16472 | Canola | cytosol | 63.78 | 80.87 |
| AT1G48900.1 | Thale cress | cytosol | 79.68 | 80.0 |
| Bra014161.1-P | Field mustard | cytosol | 79.28 | 79.44 |
| CDX77276 | Canola | cytosol | 79.28 | 79.44 |
| CDY40616 | Canola | cytosol | 78.27 | 78.59 |
| Bra018760.1-P | Field mustard | cytosol | 78.27 | 78.59 |
| CDX93702 | Canola | cytosol | 78.27 | 78.59 |
| TraesCS3B01G342900.1 | Wheat | cytosol | 73.84 | 75.83 |
| AT1G15310.1 | Thale cress | cytosol | 73.04 | 75.78 |
| EES19782 | Sorghum | cytosol | 72.43 | 74.69 |
| Bra026145.1-P | Field mustard | cytosol | 71.43 | 74.11 |
| CDY39632 | Canola | cytosol | 71.43 | 73.96 |
| CDY36546 | Canola | cytosol | 71.23 | 73.9 |
| Zm00001d038661_P001 | Maize | cytosol | 71.03 | 73.24 |
| AT5G49500.1 | Thale cress | cytosol | 71.43 | 71.43 |
| Solyc03g116810.2.1 | Tomato | nucleus | 82.09 | 69.15 |
| CDY10656 | Canola | cytosol | 26.96 | 68.37 |
| KXG37974 | Sorghum | cytosol | 60.76 | 67.71 |
| KXG37972 | Sorghum | cytosol | 60.56 | 67.49 |
| KXG34125 | Sorghum | cytosol | 59.36 | 59.36 |
| GSMUA_Achr9P25680_001 | Banana | cytosol | 50.7 | 57.8 |
| CDY17067 | Canola | cytosol, nucleus | 27.36 | 42.11 |
| CDY46694 | Canola | cytosol | 26.16 | 41.94 |
| AT5G66970.1 | Thale cress | cytosol | 14.49 | 41.14 |
| Bra014039.1-P | Field mustard | cytosol | 32.39 | 39.17 |
| TraesCS3B01G561300.1 | Wheat | plastid | 17.1 | 23.81 |
| TraesCS4B01G117800.1 | Wheat | plastid | 25.35 | 22.74 |
| TraesCS4B01G117900.1 | Wheat | plastid | 26.96 | 22.52 |
| TraesCS6B01G129300.1 | Wheat | endoplasmic reticulum | 16.7 | 13.65 |
| TraesCS4B01G367200.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, plastid | 17.71 | 13.64 |
Protein Annotations
| Gene3D:1.10.260.30 | Gene3D:1.20.120.140 | MapMan:23.3.1.1.5 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006614 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008312 | GO:GO:0016787 | GO:GO:0048500 | InterPro:IPR036891 |
| HAMAP:MF_00306 | InterPro:P-loop_NTPase | PFAM:PF00448 | PFAM:PF02881 | PFAM:PF02978 | ScanProsite:PS00300 |
| PANTHER:PTHR11564 | PANTHER:PTHR11564:SF5 | SMART:SM00382 | SMART:SM00962 | SMART:SM00963 | InterPro:SRP/SRP_N |
| InterPro:SRP54 | InterPro:SRP54_GTPase_dom | InterPro:SRP54_euk | SUPFAM:SSF47364 | SUPFAM:SSF47446 | SUPFAM:SSF52540 |
| InterPro:Signal_recog_part_SRP54_M_sf | InterPro:Signal_recog_particl_SRP54_hlx | InterPro:Signal_recog_particle_SRP54_M | TIGRFAMs:TIGR01425 | EnsemblPlantsGene:TraesCS1B01G340600 | EnsemblPlants:TraesCS1B01G340600.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:568568584..568572011
Molecular Weight (calculated)
54513.1 Da
IEP (calculated)
9.909
GRAVY (calculated)
-0.200
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLAQLGGSI SRALAQMSNA TVIDEKVLGE CLNEISRALL QSDVQFKMVR DMQTNIRKIV NLETLAAGTN KRRIIQQAVF TELCNMLDPG KPAFTPKKGK
101: PSVVMFVGLQ GSGKTTTCTK YAYYHQRKGF KPSLVCADTF RAGAFDQLKQ NATKAKIPFY GSYMESDPVK IAVEGLERFR KENSDLIIID TSGRHKQEAA
201: LFEEMRQVAE ATKPDLVIFV MDGSIGQAAF DQAQAFKQSA SVGAVIVTKL DGHAKGGGAL SAVAATKSPV IFIGTGEHID EFEIFDVKPF VSRLLGMGDL
301: SGLMDKIQDV MPADQQPELL AKLADGTFTL RLLYEQFQNL LKMGPIGQVF SMLPGFSSEL MPKGHEKEGQ AKIKRYMTIM DSMTAAELDS TNPKLMTESR
401: IIRIARGSGR QIRDVMDMLE EYKRLAKMWS KMKGLKMPKN GKMSDLSQNL NIQQMTKALP PQVLKQMGGM GGLQALMKQM GGKDMSKMLG GMGLGGD
101: PSVVMFVGLQ GSGKTTTCTK YAYYHQRKGF KPSLVCADTF RAGAFDQLKQ NATKAKIPFY GSYMESDPVK IAVEGLERFR KENSDLIIID TSGRHKQEAA
201: LFEEMRQVAE ATKPDLVIFV MDGSIGQAAF DQAQAFKQSA SVGAVIVTKL DGHAKGGGAL SAVAATKSPV IFIGTGEHID EFEIFDVKPF VSRLLGMGDL
301: SGLMDKIQDV MPADQQPELL AKLADGTFTL RLLYEQFQNL LKMGPIGQVF SMLPGFSSEL MPKGHEKEGQ AKIKRYMTIM DSMTAAELDS TNPKLMTESR
401: IIRIARGSGR QIRDVMDMLE EYKRLAKMWS KMKGLKMPKN GKMSDLSQNL NIQQMTKALP PQVLKQMGGM GGLQALMKQM GGKDMSKMLG GMGLGGD
001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK
Arabidopsis Description
SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.