Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G48900.1 | Thale cress | cytosol | 85.71 | 86.06 |
| AT1G15310.1 | Thale cress | cytosol | 77.87 | 80.79 |
| KRH47429 | Soybean | cytosol, endoplasmic reticulum, nucleus | 79.07 | 79.39 |
| KRH44479 | Soybean | cytosol | 79.07 | 79.39 |
| CDY39632 | Canola | cytosol | 76.26 | 78.96 |
| CDY36546 | Canola | cytosol | 75.86 | 78.71 |
| KRH23593 | Soybean | cytosol | 78.47 | 78.0 |
| KRH09713 | Soybean | cytosol | 78.27 | 77.96 |
| VIT_09s0002g07290.t01 | Wine grape | cytosol | 77.46 | 77.78 |
| Bra026145.1-P | Field mustard | cytosol | 74.85 | 77.66 |
| GSMUA_Achr8P03120_001 | Banana | cytosol | 77.46 | 77.46 |
| PGSC0003DMT400001674 | Potato | cytosol | 77.46 | 77.46 |
| Solyc12g042740.1.1 | Tomato | cytosol | 77.46 | 77.15 |
| EES01544 | Sorghum | cytosol | 76.26 | 76.41 |
| PGSC0003DMT400073698 | Potato | cytosol | 76.66 | 76.35 |
| Os01t0772800-01 | Rice | plasma membrane | 75.65 | 75.81 |
| Zm00001d043303_P001 | Maize | cytosol | 75.05 | 75.51 |
| Zm00001d012652_P003 | Maize | extracellular | 75.45 | 75.0 |
| HORVU3Hr1G075590.1 | Barley | cytosol | 27.77 | 71.88 |
| TraesCS1B01G340600.1 | Wheat | golgi, plastid | 71.43 | 71.43 |
| HORVU2Hr1G020570.1 | Barley | plasma membrane | 71.43 | 71.43 |
| TraesCS1D01G329300.1 | Wheat | cytosol | 71.23 | 71.23 |
| HORVU1Hr1G077990.4 | Barley | cytosol | 71.03 | 70.04 |
| HORVU5Hr1G019120.2 | Barley | cytosol | 26.36 | 68.23 |
| HORVU6Hr1G029680.1 | Barley | cytosol | 26.36 | 68.23 |
| HORVU2Hr1G125480.2 | Barley | cytosol | 26.56 | 67.01 |
| HORVU7Hr1G036330.1 | Barley | cytosol | 32.39 | 66.81 |
| TraesCS3D01G308700.1 | Wheat | cytosol, mitochondrion | 64.99 | 66.74 |
| Os05t0509500-01 | Rice | plasma membrane | 64.39 | 66.25 |
| TraesCS3B01G342900.1 | Wheat | cytosol | 63.98 | 65.7 |
| Solyc03g116810.2.1 | Tomato | nucleus | 77.46 | 65.25 |
| EES19782 | Sorghum | cytosol | 62.98 | 64.94 |
| TraesCS1B01G340700.1 | Wheat | cytosol | 63.78 | 64.17 |
| HORVU2Hr1G097520.1 | Barley | cytosol | 28.37 | 63.51 |
| Zm00001d038661_P001 | Maize | cytosol | 60.56 | 62.45 |
| KXG37974 | Sorghum | cytosol | 54.73 | 60.99 |
| KXG37972 | Sorghum | cytosol | 54.33 | 60.54 |
| GSMUA_Achr9P25680_001 | Banana | cytosol | 45.07 | 51.38 |
| KXG34125 | Sorghum | cytosol | 50.91 | 50.91 |
| AT5G66970.1 | Thale cress | cytosol | 14.08 | 40.0 |
| AT2G45770.1 | Thale cress | plastid | 16.1 | 21.86 |
| AT5G03940.1 | Thale cress | plastid | 23.94 | 21.1 |
| AT4G30600.1 | Thale cress | endoplasmic reticulum | 15.29 | 11.99 |
Protein Annotations
| Gene3D:1.10.260.30 | Gene3D:1.20.120.140 | MapMan:23.3.1.1.5 | Gene3D:3.40.50.300 | EntrezGene:835010 | ProteinID:AAA66199.1 |
| ProteinID:AED95821.1 | ProteinID:ANM70640.1 | ArrayExpress:AT5G49500 | EnsemblPlantsGene:AT5G49500 | RefSeq:AT5G49500 | TAIR:AT5G49500 |
| RefSeq:AT5G49500-TAIR-G | EnsemblPlants:AT5G49500.1 | TAIR:AT5G49500.1 | ProteinID:BAB10763.1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005786 |
| GO:GO:0006614 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008312 | GO:GO:0016787 | GO:GO:0030529 |
| GO:GO:0048500 | InterPro:IPR036891 | HAMAP:MF_00306 | RefSeq:NP_001332231.1 | RefSeq:NP_199761.1 | InterPro:P-loop_NTPase |
| UniProt:P49966 | PFAM:PF00448 | PFAM:PF02881 | PFAM:PF02978 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS00300 | PANTHER:PTHR11564 |
| PANTHER:PTHR11564:SF5 | SMART:SM00962 | SMART:SM00963 | InterPro:SRP/SRP_N | InterPro:SRP54 | InterPro:SRP54_GTPase_dom |
| InterPro:SRP54_euk | SUPFAM:SSF47364 | SUPFAM:SSF47446 | SUPFAM:SSF52540 | InterPro:Signal_recog_part_SRP54_M_sf | InterPro:Signal_recog_particl_SRP54_hlx |
| InterPro:Signal_recog_particle_SRP54_M | TIGRFAMs:TIGR01425 | UniParc:UPI000016284D | SEG:seg | : | : |
Description
SRP-54BSignal recognition particle 54 kDa protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P49966]
Coordinates
chr5:-:20077345..20080206
Molecular Weight (calculated)
55266.0 Da
IEP (calculated)
9.691
GRAVY (calculated)
-0.255
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLAELGGRI MSAIQKMNNV TIIDEKALND CLNEITRALL QSDVSFPLVK EMQTNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KSAFAPKKAK
101: PSVVMFVGLQ GEVLEKPQLV PSMLIIIRRK GYKPALVCAD TFRAGAFDQL KQNATKSKIP YYGSYTGSDP VKIAVEGVDR FKKENCDLII VDTSGRHKQQ
201: ASLFEEMRQI SEATKPDLVI FVMDSSIGQT AFEQARAFKQ TVAVGAVIIT KMDGHAKGGG TLSAVAATKS PVIFIGTGEH MDEFEVFDAK PFVSRLLGNG
301: DMSGFVNKLQ EVVPKDQQPE LLEMLSHGKF TLRIMYDQFQ NMLNMGPLKE VFSMLPGMRA EMMPEGHEKE SQAKIKRYMT MMDSMTNEEL DSSNPKVFNE
401: SRIMRIARGS GRIVREVMEM LEEYKRLTTM WGKVKGLKNL EKGNMSALSK NKNSQQLSKV LPAQMLKQIG GMSGLQSLMK QMGSGKDLMG MFGGRDE
101: PSVVMFVGLQ GEVLEKPQLV PSMLIIIRRK GYKPALVCAD TFRAGAFDQL KQNATKSKIP YYGSYTGSDP VKIAVEGVDR FKKENCDLII VDTSGRHKQQ
201: ASLFEEMRQI SEATKPDLVI FVMDSSIGQT AFEQARAFKQ TVAVGAVIIT KMDGHAKGGG TLSAVAATKS PVIFIGTGEH MDEFEVFDAK PFVSRLLGNG
301: DMSGFVNKLQ EVVPKDQQPE LLEMLSHGKF TLRIMYDQFQ NMLNMGPLKE VFSMLPGMRA EMMPEGHEKE SQAKIKRYMT MMDSMTNEEL DSSNPKVFNE
401: SRIMRIARGS GRIVREVMEM LEEYKRLTTM WGKVKGLKNL EKGNMSALSK NKNSQQLSKV LPAQMLKQIG GMSGLQSLMK QMGSGKDLMG MFGGRDE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.