Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G029680.1 | Barley | cytosol | 67.22 | 84.38 |
| HORVU5Hr1G019120.2 | Barley | cytosol | 67.22 | 84.38 |
| HORVU2Hr1G125480.2 | Barley | cytosol | 66.39 | 81.22 |
| HORVU2Hr1G097520.1 | Barley | cytosol | 70.95 | 77.03 |
| HORVU3Hr1G075590.1 | Barley | cytosol | 41.49 | 52.08 |
| CDY10656 | Canola | cytosol | 40.25 | 49.49 |
| TraesCS3B01G342900.1 | Wheat | cytosol | 89.63 | 44.63 |
| TraesCS3D01G308700.1 | Wheat | cytosol, mitochondrion | 89.21 | 44.42 |
| TraesCS3A01G322800.1 | Wheat | mitochondrion | 87.55 | 43.59 |
| Zm00001d043303_P001 | Maize | cytosol | 80.5 | 39.27 |
| EES01544 | Sorghum | cytosol | 80.08 | 38.91 |
| Os01t0772800-01 | Rice | plasma membrane | 80.08 | 38.91 |
| Zm00001d012652_P003 | Maize | extracellular | 79.67 | 38.4 |
| KRH44479 | Soybean | cytosol | 77.18 | 37.58 |
| KRH47429 | Soybean | cytosol, endoplasmic reticulum, nucleus | 77.18 | 37.58 |
| CDY36546 | Canola | cytosol | 74.27 | 37.37 |
| KRH09713 | Soybean | cytosol | 77.18 | 37.27 |
| KRH23593 | Soybean | cytosol | 77.18 | 37.2 |
| VIT_09s0002g07290.t01 | Wine grape | cytosol | 76.35 | 37.17 |
| CDY39632 | Canola | cytosol | 73.86 | 37.08 |
| HORVU2Hr1G020570.1 | Barley | plasma membrane | 76.35 | 37.02 |
| Bra026145.1-P | Field mustard | cytosol | 73.44 | 36.95 |
| Solyc12g042740.1.1 | Tomato | cytosol | 75.93 | 36.67 |
| PGSC0003DMT400073698 | Potato | cytosol | 75.52 | 36.47 |
| PGSC0003DMT400001674 | Potato | cytosol | 75.1 | 36.42 |
| HORVU1Hr1G077990.4 | Barley | cytosol | 75.52 | 36.11 |
| Bra018760.1-P | Field mustard | cytosol | 73.44 | 35.76 |
| AT1G48900.1 | Thale cress | cytosol | 73.44 | 35.76 |
| AT1G15310.1 | Thale cress | cytosol | 70.95 | 35.7 |
| CDX93702 | Canola | cytosol | 73.03 | 35.56 |
| CDY40616 | Canola | cytosol | 73.03 | 35.56 |
| Bra014161.1-P | Field mustard | cytosol | 73.03 | 35.48 |
| CDX77276 | Canola | cytosol | 73.03 | 35.48 |
| CDY16472 | Canola | cytosol | 54.36 | 33.42 |
| AT5G66970.1 | Thale cress | cytosol | 24.07 | 33.14 |
| AT5G49500.1 | Thale cress | cytosol | 66.81 | 32.39 |
| Solyc03g116810.2.1 | Tomato | nucleus | 75.93 | 31.02 |
| GSMUA_Achr9P25680_001 | Banana | cytosol | 51.04 | 28.21 |
| CDY17067 | Canola | cytosol, nucleus | 36.93 | 27.55 |
| CDY46694 | Canola | cytosol | 35.27 | 27.42 |
| Bra014039.1-P | Field mustard | cytosol | 43.57 | 25.55 |
| HORVU3Hr1G110160.4 | Barley | mitochondrion | 26.56 | 16.04 |
| HORVU4Hr1G021950.4 | Barley | plastid | 33.2 | 14.41 |
| HORVU4Hr1G021960.1 | Barley | plastid | 30.71 | 13.19 |
| HORVU6Hr1G018280.1 | Barley | cytosol, endoplasmic reticulum | 24.48 | 9.32 |
Protein Annotations
| Gene3D:1.20.120.140 | MapMan:23.3.1.1.5 | Gene3D:3.40.50.300 | UniProt:A0A287W1K6 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006614 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016787 |
| GO:GO:0048500 | EnsemblPlantsGene:HORVU7Hr1G036330 | EnsemblPlants:HORVU7Hr1G036330.1 | InterPro:P-loop_NTPase | PFAM:PF00448 | PFAM:PF02881 |
| PANTHER:PTHR11564 | PANTHER:PTHR11564:SF5 | SMART:SM00962 | InterPro:SRP/SRP_N | InterPro:SRP54 | InterPro:SRP54_GTPase_dom |
| SUPFAM:SSF47364 | SUPFAM:SSF52540 | InterPro:Signal_recog_particl_SRP54_hlx | UniParc:UPI000B4863BC | SEG:seg | : |
Description
No Description!
Coordinates
chrchr7H:+:84006342..84008301
Molecular Weight (calculated)
26169.8 Da
IEP (calculated)
8.117
GRAVY (calculated)
-0.114
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXDCLNEIT RALLQADVQF DMVRDMQANV KLAVYLGALA AGTDKRRVIK TVVFDELCNM LDAGKPDFAP EKGKPCVVMF VGLQGSGKTI TCMKYAHYHQ
101: KIGFKPAQVC ADTFRAGAFD QLKQNATEIM VPFYGSYMEL DPVKIVVEGV ERFRKENCDL IIVDTSGRHK QEAALFEETR QVSEATKPDL VIFVMDGSIG
201: QAAFPQAQAF RQSVPVGDVI VTKMDGHVKG GGALTAKKKT R
101: KIGFKPAQVC ADTFRAGAFD QLKQNATEIM VPFYGSYMEL DPVKIVVEGV ERFRKENCDL IIVDTSGRHK QEAALFEETR QVSEATKPDL VIFVMDGSIG
201: QAAFPQAQAF RQSVPVGDVI VTKMDGHVKG GGALTAKKKT R
001: MVLAELGGRI TRAIQQMNNV TIIDEKVLND FLNEITRALL QSDVSFGLVE KMQTNIKKIV NLDDLAAGHN KRLIIEQAIF KELCRMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK
Arabidopsis Description
SRP-54ASignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:Q56XJ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.