Factsheet for HORVU4Hr1G021950.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G115600.1	Wheat	plastid	98.02	98.19
TraesCS4A01G197600.1	Wheat	plastid	97.3	97.65
TraesCS4B01G117900.1	Wheat	plastid	94.05	87.73
EES16662	Sorghum	plastid	84.5	83.9
Zm00001d023431_P002	Maize	plastid	83.78	82.45
HORVU4Hr1G021960.1	Barley	plastid	71.89	71.12
KRH67940	Soybean	plastid	68.65	67.43
GSMUA_Achr10P...	Banana	plastid	69.55	67.13
VIT_08s0007g03160.t01	Wine grape	plastid	68.29	66.84
PGSC0003DMT400022884	Potato	plastid	66.13	65.65
Solyc09g009940.2.1	Tomato	plastid	67.03	65.61
AT5G03940.1	Thale cress	plastid	65.95	64.89
CDX70273	Canola	plastid	64.86	63.6
Bra009499.1-P	Field mustard	plastid	64.68	63.43
CDY41424	Canola	plastid	64.5	63.36
CDY04905	Canola	plastid	64.14	63.12
Bra028809.1-P	Field mustard	plastid	64.14	63.12
CDY14166	Canola	plastid	63.42	62.41
CDY14165	Canola	plastid	19.64	48.44
HORVU2Hr1G125480.2	Barley	cytosol	12.07	34.01
HORVU5Hr1G019120.2	Barley	cytosol	11.71	33.85
HORVU6Hr1G029680.1	Barley	cytosol	11.71	33.85
HORVU3Hr1G075590.1	Barley	cytosol	11.53	33.33
HORVU7Hr1G036330.1	Barley	cytosol	14.41	33.2
HORVU2Hr1G097520.1	Barley	cytosol	12.43	31.08
HORVU2Hr1G020570.1	Barley	plasma membrane	24.5	27.36
HORVU1Hr1G077990.4	Barley	cytosol	24.32	26.79
HORVU3Hr1G110160.4	Barley	mitochondrion	16.58	23.06
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	18.2	15.96

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	UniProt:A0A287NIG6	InterPro:AAA+_ATPase
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787
GO:GO:0048500	EnsemblPlantsGene:HORVU4Hr1G021950	EnsemblPlants:HORVU4Hr1G021950.4	InterPro:IPR036891	HAMAP:MF_00306	InterPro:P-loop_NTPase
PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF19
SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP_Ffh
SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR00959
UniParc:UPI000B465CB3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:114771254..114785386

Molecular Weight (calculated)

60980.6 Da

IEP (calculated)

10.471

GRAVY (calculated)

-0.310

Length

555 amino acids

Sequence
(BLAST)

001: PMEATATLTL SSSPTGARRL PARPAAASLH LRRVPDLSFR LRGAQGPAAF RALSSPFPGC RRRRRGSGMV VRAEMFGQLT TGLESAWNKL RGVDRLTKEN
101: IAEPMRDIRR ALLEADVSVP VARSFIESVT EKAVGTDVIR GVQPEQQLVK VVNDELVQLM GGEVSDLVFA KTGPTVILLA GLQGVGKTTV CAKLAFYLKK
201: MGKSCMLVAA DVYRPAAIDQ LTILGKKVGV PVYSEGTEAK PSEIAKNGLK EAKSKKTDVV IVDTAGRLQV DKAMMNELKE VKKAVKPTEV LLVVDAMTGQ
301: EAAALVGAFN VEIGITGAIL TKLDGDSRGG AALSIKEVSG KPIKFIGRGE RVEDLEPFYP DRMAQRILGM GDVLSFVEQA QQVMNQEDAE ELQKKIMSAK
401: FNFNDFLKQT KAIAQMGSFS RIIGMIPGMN KVTPAQIREA EKNVKFMESM INVMTADERE RPELLAESRE RRRRVAKDSG KTEQQVSQLV SQLFQMRTRM
501: QKMMAGMQGK DTPDMETLAE SIKSEEQAAV GTGKRRRKYG NLRQRDLDSM RGYRR

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.