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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400003274

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G03940.1 PGSC0003DMT400003274 AT2G47450.1 11306572
AT5G03940.1 PGSC0003DMT400003274 AT2G47450.1 14517205
AT5G03940.1 PGSC0003DMT400003274 AT2G47450.1 15292240
AT5G03940.1 PGSC0003DMT400003274 AT2G47450.1 15632183
AT5G03940.1 PGSC0003DMT400003274 AT2G47450.1 16678173
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g009940.2.1 Tomato plastid 98.21 96.83
VIT_08s0007g03160.t01 Wine grape plastid 83.72 82.54
KRH67940 Soybean plastid 82.29 81.42
AT5G03940.1 Thale cress plastid 80.5 79.79
GSMUA_Achr10P... Banana plastid 81.93 79.65
CDY41424 Canola plastid 79.25 78.41
Bra009499.1-P Field mustard plastid 79.25 78.27
CDX70273 Canola plastid 79.07 78.09
Bra028809.1-P Field mustard plastid 75.85 75.18
CDY04905 Canola plastid 75.67 75.0
CDY14166 Canola plastid 75.49 74.82
Os11t0153600-01 Rice cytosol 27.91 71.23
Zm00001d052556_P001 Maize plastid 66.73 68.44
KXG27759 Sorghum plastid 66.55 67.51
EES16662 Sorghum plastid 67.44 67.44
TraesCS4D01G115500.1 Wheat plastid 66.73 67.33
Os11t0153700-01 Rice plastid 66.91 67.15
TraesCS4A01G197700.1 Wheat plastid 66.19 66.79
Zm00001d023431_P002 Maize plastid 67.08 66.49
TraesCS4B01G117800.1 Wheat plastid 65.83 66.43
HORVU4Hr1G021950.4 Barley plastid 65.65 66.13
TraesCS4D01G115600.1 Wheat plastid 65.3 65.88
TraesCS4A01G197600.1 Wheat plastid 65.12 65.82
HORVU4Hr1G021960.1 Barley plastid 64.76 64.53
CDY14165 Canola plastid 24.69 61.33
TraesCS4B01G117900.1 Wheat plastid 64.04 60.17
PGSC0003DMT400071384 Potato plastid 17.17 26.09
PGSC0003DMT400001674 Potato cytosol 23.08 25.96
PGSC0003DMT400073698 Potato cytosol 23.08 25.85
PGSC0003DMT400020462 Potato endoplasmic reticulum, extracellular 16.28 14.7
Os11t0153800-01 Rice nucleus 0.54 2.78
Protein Annotations
Gene3D:1.10.260.30Gene3D:1.20.120.140MapMan:23.1.7.3.2Gene3D:3.40.50.300InterPro:AAA+_ATPaseGO:GO:0000166
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005515GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006614GO:GO:0006810GO:GO:0008150GO:GO:0008312GO:GO:0009507GO:GO:0009536
GO:GO:0009570GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0019904GO:GO:0032991
GO:GO:0043234GO:GO:0048500GO:GO:0070208GO:GO:0080085InterPro:IPR036891UniProt:M1AHD8
HAMAP:MF_00306InterPro:P-loop_NTPasePFAM:PF00448PFAM:PF02881PFAM:PF02978EnsemblPlantsGene:PGSC0003DMG400008871
PGSC:PGSC0003DMG400008871EnsemblPlants:PGSC0003DMT400022884ScanProsite:PS00300PANTHER:PTHR11564PANTHER:PTHR11564:SF24SMART:SM00382
SMART:SM00962SMART:SM00963InterPro:SRP54InterPro:SRP54_GTPase_domInterPro:SRP_FfhSUPFAM:SSF47446
SUPFAM:SSF52540InterPro:Signal_recog_part_SRP54_M_sfInterPro:Signal_recog_particl_SRP54_hlxInterPro:Signal_recog_particle_SRP54_MTIGRFAMs:TIGR00959UniParc:UPI0002950BCB
Description
Signal recognition particle protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008871]
Coordinates
chr9:+:2589906..2598035
Molecular Weight (calculated)
61458.1 Da
IEP (calculated)
10.212
GRAVY (calculated)
-0.264
Length
559 amino acids
Sequence
(BLAST)
001: MASHHFFPLS KATLSTSKLN PTCNSSSSWI GCTHSLSFSS RNSFTRDTWR VINSKNVVTI RRETRGVIRA EMFGQLTSGL ENAWNKLKGE EVLTKENIVE
101: PMRDIRRALL EADVSLPVVR RFVQSVSEEA VGTGLIRGVK PDQQLVKIVR DELVKLMGGE VSELVFAKSK PTVILLAGLQ GVGKTTVSAK LALYLKKQGK
201: SCMLIAGDVY RPAAIDQLVI LGKQVDVPVY AAGTDVKPAE IARQGLQEAK KKNVDVVIMD TAGRLQIDKT MMDELKDVKR VLNPTEVLLV VDAMTGQEAA
301: ALVTTFNLEI GITGAILTKL DGDSRGGAAL SVKEVSGKPI KLVGRGERME DLEPFYPDRM AGRILGMGDV LSFVEKAQEV MRQEDAEDLQ KKIMSAKFDF
401: NDFLKQTRAV ARMGTMSRVI GMMPGMGKVT PAQIREAEKS LLIMESMIEV MTPEEREQPE LLAESPARRK RIAQESGKTE QQVSQLVAQL FQMRVRMKNL
501: MGVMEGGSIP ALSNLEEALK SEQQAPPGTA RRKRRSEPRK QFADSGSARP SPRGFGGKN
Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)
001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN
Arabidopsis Description
FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.