Factsheet for Os11t0153800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0131900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	Os03t0131900-01	AT2G47450.1	11306572
AT5G03940.1	Os03t0131900-01	AT2G47450.1	14517205
AT5G03940.1	Os03t0131900-01	AT2G47450.1	15292240
AT5G03940.1	Os03t0131900-01	AT2G47450.1	15632183
AT5G03940.1	Os03t0131900-01	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0772800-01	Rice	plasma membrane	2.78	0.6
PGSC0003DMT400022884	Potato	plastid	2.78	0.54
KRH67940	Soybean	plastid	2.78	0.53
Solyc09g009940.2.1	Tomato	plastid	2.78	0.53
GSMUA_Achr10P...	Banana	plastid	2.78	0.52
Os11t0153700-01	Rice	plastid	1.85	0.36
AT5G03940.1	Thale cress	plastid	1.85	0.35
Bra028809.1-P	Field mustard	plastid	1.85	0.35
CDY04905	Canola	plastid	1.85	0.35
CDY14166	Canola	plastid	1.85	0.35
CDY41424	Canola	plastid	1.85	0.35
Bra009499.1-P	Field mustard	plastid	1.85	0.35
CDX70273	Canola	plastid	1.85	0.35
VIT_08s0007g03160.t01	Wine grape	plastid	1.85	0.35
KXG27759	Sorghum	plastid	0.0	0.0
Os01t0958100-01	Rice	plastid	0.0	0.0
Os05t0509500-01	Rice	plasma membrane	0.0	0.0
Os11t0153600-01	Rice	cytosol	0.0	0.0
HORVU4Hr1G021960.1	Barley	plastid	0.0	0.0
CDY14165	Canola	plastid	0.0	0.0
TraesCS4A01G197700.1	Wheat	plastid	0.0	0.0
TraesCS4B01G117800.1	Wheat	plastid	0.0	0.0
TraesCS4D01G115500.1	Wheat	plastid	0.0	0.0
Zm00001d052556_P001	Maize	plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.10.2780	MapMan:17.1.3.1.26	EntrezGene:4349810	ProteinID:AAX92737.1	ProteinID:ABG22370.1	EMBL:AK058630
ProteinID:BAF27627.2	ProteinID:BAT12738.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	EnsemblPlantsGene:Os11g0153800	EnsemblPlants:Os11t0153800-01	PFAM:PD012268	PFAM:PF03297	PANTHER:PTHR12850
PANTHER:PTHR12850:SF13	UniProt:Q53QG2	InterPro:Ribosomal_S25	UniParc:UPI0000508939	RefSeq:XP_015617530.1	SEG:seg

Description

Similar to Ribosomal protein S25 (40S ribosomal 25S subunit). (Os11t0153800-01)

Coordinates

chr11:+:2522193..2528113

Molecular Weight (calculated)

11919.5 Da

IEP (calculated)

11.136

GRAVY (calculated)

-0.854

Length

108 amino acids

Sequence
(BLAST)

001: MAPKKDKAPP PSSKPAKSGG GKQKKKKWSK GKQKEKVNNS VLFDKATYDK LLSEVPKYKQ ITPSVLSERL RINGSLARQA IKDLESRGAI RVVSVHSSQL
101: IYTRATNA

Best Arabidopsis Sequence Match ( AT4G34555.1 )
(BLAST)

001: MAPKKDKVPP PSSKPAKSGG GKQKKKKWSK GKQKEKVNNM VLFDQATYDK LLSEAPKFKL ITPSILSDRL RINGSLARRA IRELMAKGTI RMVSAHSSQQ
101: IYTRATHG

Arabidopsis Description

RPS25D40S ribosomal protein S25-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.