CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77337
CDY70592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	CDX77337	AT2G47450.1	11306572
AT5G03940.1	CDY70592	AT2G47450.1	11306572
AT5G03940.1	CDX77337	AT2G47450.1	14517205
AT5G03940.1	CDY70592	AT2G47450.1	14517205
AT5G03940.1	CDX77337	AT2G47450.1	15292240
AT5G03940.1	CDY70592	AT2G47450.1	15292240
AT5G03940.1	CDX77337	AT2G47450.1	15632183
AT5G03940.1	CDY70592	AT2G47450.1	15632183
AT5G03940.1	CDX77337	AT2G47450.1	16678173
AT5G03940.1	CDY70592	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14166	Canola	plastid	95.11	37.94
Bra028809.1-P	Field mustard	plastid	88.44	35.28
CDY04905	Canola	plastid	88.44	35.28
CDY41424	Canola	plastid	83.11	33.1
CDX70273	Canola	plastid	82.22	32.69
AT5G03940.1	Thale cress	plastid	79.11	31.56
VIT_08s0007g03160.t01	Wine grape	plastid	66.22	26.28
KRH67940	Soybean	plastid	64.0	25.49
PGSC0003DMT400022884	Potato	plastid	61.33	24.69
Solyc09g009940.2.1	Tomato	plastid	61.33	24.34
GSMUA_Achr10P...	Banana	plastid	60.44	23.65
KXG27759	Sorghum	plastid	53.78	21.96
Zm00001d052556_P001	Maize	plastid	52.89	21.83
EES16662	Sorghum	plastid	52.89	21.29
Zm00001d023431_P002	Maize	plastid	53.33	21.28
TraesCS4D01G115500.1	Wheat	plastid	51.11	20.76
TraesCS4B01G117800.1	Wheat	plastid	50.22	20.4
TraesCS4A01G197700.1	Wheat	plastid	50.22	20.4
Os11t0153700-01	Rice	plastid	50.22	20.29
TraesCS4D01G115600.1	Wheat	plastid	49.33	20.04
TraesCS4A01G197600.1	Wheat	plastid	48.89	19.89
HORVU4Hr1G021950.4	Barley	plastid	48.44	19.64
HORVU4Hr1G021960.1	Barley	plastid	48.89	19.61
TraesCS4B01G117900.1	Wheat	plastid	48.89	18.49
CDY10656	Canola	cytosol	9.33	10.71
CDX77276	Canola	cytosol	17.78	8.06
CDY27360	Canola	plastid	12.89	7.9
CDY37064	Canola	plastid	12.89	7.88
CDY40616	Canola	cytosol	17.33	7.88
CDX93702	Canola	cytosol	17.33	7.88
CDY18901	Canola	plastid	12.0	7.48
CDX74765	Canola	plastid	12.0	7.34
CDY36546	Canola	cytosol	15.56	7.31
CDY39632	Canola	cytosol	15.56	7.29
CDY39221	Canola	cytosol, endoplasmic reticulum	16.0	5.85
CDX72255	Canola	cytosol, endoplasmic reticulum	15.56	5.68
CDY28196	Canola	endoplasmic reticulum	15.56	5.63
CDX68673	Canola	extracellular	15.11	5.41
CDY16472	Canola	cytosol	7.56	4.34
Os11t0153600-01	Rice	cytosol	3.11	3.2
CDY17067	Canola	cytosol, nucleus	4.0	2.79
CDY46694	Canola	cytosol	3.56	2.58
Os11t0153800-01	Rice	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.20.120.140	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078FIA7	UniProt:A0A078FIA7	EnsemblPlants:CDY14165
ProteinID:CDY14165	ProteinID:CDY14165.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00078719001
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PANTHER:PTHR11564	PANTHER:PTHR11564:SF24	SMART:SM00963
InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	InterPro:Signal_recog_particl_SRP54_hlx
UniParc:UPI0004EEE352	SEG:seg	:	:	:	:

Description

BnaC02g02820DBnaC02g02820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIA7]

Coordinates

chrLK032040:+:763205..764464

Molecular Weight (calculated)

24648.9 Da

IEP (calculated)

10.670

GRAVY (calculated)

-0.125

Length

225 amino acids

Sequence
(BLAST)

001: MESLQFSSRF SVNKVLCTQN RTRSGASKAT FRSAFTGITN SASLSSKNTS TREIWSWVKT KTVGHGSYRR SQVRAEMFGQ LSSGLEAAWT KLKGEDVMTK
101: ENVAEPMKDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK VMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVAAKLAYNL
201: KKQVMIFEDF DRIVTLSLSL SLSTN

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.