Factsheet for Zm00001d023431_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d027518_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	Zm00001d027518_P001	AT2G47450.1	11306572
AT5G03940.1	Zm00001d027518_P001	AT2G47450.1	14517205
AT5G03940.1	Zm00001d027518_P001	AT2G47450.1	15292240
AT5G03940.1	Zm00001d027518_P001	AT2G47450.1	15632183
AT5G03940.1	Zm00001d027518_P001	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16662	Sorghum	plastid	95.21	96.06
TraesCS4A01G197600.1	Wheat	plastid	82.62	84.27
TraesCS4D01G115600.1	Wheat	plastid	82.62	84.12
HORVU4Hr1G021950.4	Barley	plastid	82.45	83.78
Zm00001d052556_P001	Maize	plastid	74.65	77.25
TraesCS4B01G117900.1	Wheat	plastid	80.5	76.3
KRH67940	Soybean	plastid	69.5	69.38
VIT_08s0007g03160.t01	Wine grape	plastid	68.79	68.43
GSMUA_Achr10P...	Banana	plastid	69.68	68.35
AT5G03940.1	Thale cress	plastid	67.73	67.73
PGSC0003DMT400022884	Potato	plastid	66.49	67.08
Solyc09g009940.2.1	Tomato	plastid	67.2	66.84
Bra009499.1-P	Field mustard	plastid	67.02	66.78
CDX70273	Canola	plastid	66.84	66.61
CDY04905	Canola	plastid	66.49	66.49
CDY41424	Canola	plastid	66.49	66.37
Bra028809.1-P	Field mustard	plastid	66.13	66.13
CDY14166	Canola	plastid	65.96	65.96
CDY14165	Canola	plastid	21.28	53.33
Zm00001d012652_P003	Maize	extracellular	24.82	28.0
Zm00001d043303_P001	Maize	cytosol	24.29	27.73
Zm00001d038661_P001	Maize	cytosol	23.23	27.18
Zm00001d042044_P001	Maize	plastid	16.31	21.45
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	18.79	16.8

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	EntrezGene:100274153	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	UniProt:A0A1D6ITB4
InterPro:AAA+_ATPase	ProteinID:AQK39312.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0016787	GO:GO:0048500	InterPro:IPR036891	HAMAP:MF_00306	InterPro:P-loop_NTPase
PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	PANTHER:PTHR11564	PANTHER:PTHR11564:SF19	SMART:SM00382
SMART:SM00962	SMART:SM00963	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP_Ffh	SUPFAM:SSF47446
SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR00959	UniParc:UPI000845065A
EnsemblPlantsGene:Zm00001d023431	EnsemblPlants:Zm00001d023431_P002	EnsemblPlants:Zm00001d023431_T002	SEG:seg	:	:

Description

Signal recognition particle 54 kDa protein chloroplastic

Coordinates

chr10:-:5419971..5427473

Molecular Weight (calculated)

62053.9 Da

IEP (calculated)

10.525

GRAVY (calculated)

-0.265

Length

564 amino acids

Sequence
(BLAST)

001: MEATTALALS SSSLATARRS PEKATAASLS LRRFSATTSL HLRAARSPAL RSHQSPFQGW RRRGRAGGLV VRAEMFGQLT TGLESAWNKL RGVDVLTKEN
101: IAEPMRDIRR ALLEADVSLP VVRRFIESVS EKAVGTDVIR GVRPDQQLVK VVSDELVQLM GGEVSDLVFA KSGPTIILLA GLQGVGKTTV CAKLAFYLKK
201: LVFSLSLLQG KSCMLVAADV YRPAAIDQLT ILGKKVGVPV YSEGTEAKPS QIAKNGLKEA KVNKADVIIV DTAGRLQVDK AMMNELKEVK KAVNPTEVLL
301: VVDAMTGQEA AGLVSSFNDE IGITGAILTK LDGDSRGGAA LSVKEVSGKP IKFVGQGERI EDLEPFYPDR MAQRILGMGD VLSFVEKAQE VMRQEDADEL
401: QKKILSAKFN FNDFLKQTQM IAKMGSFSRL IGMIPGMNKV TPAQIREAEK NLKFMESMIN VMTLEERERP ELLAESRERR KRVAKDSGKT EQQVSQLVAQ
501: LFQMRAKMQK MMGAMQGKES PDMDELMGSM KAEEQSAAGT GRRRRKYGNL RQRQLDAMRG FRRR

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.