CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77337
CDY70592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	CDX77337	AT2G47450.1	11306572
AT5G03940.1	CDY70592	AT2G47450.1	11306572
AT5G03940.1	CDX77337	AT2G47450.1	14517205
AT5G03940.1	CDY70592	AT2G47450.1	14517205
AT5G03940.1	CDX77337	AT2G47450.1	15292240
AT5G03940.1	CDY70592	AT2G47450.1	15292240
AT5G03940.1	CDX77337	AT2G47450.1	15632183
AT5G03940.1	CDY70592	AT2G47450.1	15632183
AT5G03940.1	CDX77337	AT2G47450.1	16678173
AT5G03940.1	CDY70592	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028809.1-P	Field mustard	plastid	96.81	96.81
CDY04905	Canola	plastid	96.81	96.81
CDY14165	Canola	plastid	37.94	95.11
CDX70273	Canola	plastid	88.3	87.99
CDY41424	Canola	plastid	87.94	87.79
AT5G03940.1	Thale cress	plastid	87.06	87.06
VIT_08s0007g03160.t01	Wine grape	plastid	78.01	77.6
PGSC0003DMT400022884	Potato	plastid	74.82	75.49
KRH67940	Soybean	plastid	75.35	75.22
Solyc09g009940.2.1	Tomato	plastid	74.65	74.25
GSMUA_Achr10P...	Banana	plastid	73.05	71.65
Os11t0153600-01	Rice	cytosol	25.71	66.21
EES16662	Sorghum	plastid	65.6	66.19
Zm00001d023431_P002	Maize	plastid	65.96	65.96
KXG27759	Sorghum	plastid	63.48	64.97
Zm00001d052556_P001	Maize	plastid	62.77	64.95
Os11t0153700-01	Rice	plastid	64.01	64.81
TraesCS4D01G115500.1	Wheat	plastid	62.94	64.08
TraesCS4A01G197700.1	Wheat	plastid	62.77	63.9
TraesCS4D01G115600.1	Wheat	plastid	62.59	63.72
TraesCS4B01G117800.1	Wheat	plastid	62.59	63.72
TraesCS4A01G197600.1	Wheat	plastid	62.41	63.65
HORVU4Hr1G021950.4	Barley	plastid	62.41	63.42
HORVU4Hr1G021960.1	Barley	plastid	62.41	62.75
TraesCS4B01G117900.1	Wheat	plastid	61.52	58.32
CDY16472	Canola	cytosol	19.33	27.81
CDX77276	Canola	cytosol	23.4	26.61
CDX93702	Canola	cytosol	23.23	26.46
CDY40616	Canola	cytosol	23.23	26.46
CDY18901	Canola	plastid	16.67	26.04
CDY27360	Canola	plastid	16.84	25.89
CDY37064	Canola	plastid	16.84	25.82
CDX74765	Canola	plastid	16.67	25.54
CDY36546	Canola	cytosol	21.63	25.47
CDY39632	Canola	cytosol	21.63	25.42
CDY10656	Canola	cytosol	8.33	23.98
CDY46694	Canola	cytosol	11.17	20.32
CDY17067	Canola	cytosol, nucleus	11.35	19.81
CDY39221	Canola	cytosol, endoplasmic reticulum	16.31	14.96
CDX72255	Canola	cytosol, endoplasmic reticulum	16.13	14.77
CDY28196	Canola	endoplasmic reticulum	16.13	14.63
CDX68673	Canola	extracellular	15.96	14.33
Os11t0153800-01	Rice	nucleus	0.35	1.85

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	GO:A0A078FM50	UniProt:A0A078FM50
InterPro:AAA+_ATPase	EnsemblPlants:CDY14166	ProteinID:CDY14166	ProteinID:CDY14166.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006614	GO:GO:0006810
GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00078720001	InterPro:IPR036891
HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300
PANTHER:PTHR11564	PANTHER:PTHR11564:SF24	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP54
InterPro:SRP54_GTPase_dom	InterPro:SRP_Ffh	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx
InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR00959	UniParc:UPI0004EDF7A8	SEG:seg	:	:

Description

BnaC02g02830DBnaC02g02830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FM50]

Coordinates

chrLK032040:+:765848..769072

Molecular Weight (calculated)

61309.7 Da

IEP (calculated)

10.220

GRAVY (calculated)

-0.285

Length

564 amino acids

Sequence
(BLAST)

001: MESLQFSSRF SVNKVLCTQN RTRSGASKAT FRSAFTGITN SASLSSKNTS TREIWSWVKT KTVGHGSYRR SQVRAEMFGQ LSSGLEAAWT KLKGEDVMTK
101: ENVAEPMKDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK VMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVAAKLAYNL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEKI GVPVYTAGTE AKPSDIAKQG LKEAKLNNVD VVIMDTAGRL QVDKEMMDEL KDVKRFLNPT ETLLVVDAMT
301: GQEAASLVTA FSVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPNRMAGRIL GMGDVLSFVE KAQEVMRQED AEDLQKKIMS
401: EKFDFNDLLK QTRAVAKIGS VSRVLGMIPG MGKVSPAQIR EAEKSLVIME AMIEAMTPEE KEKPELLAES PERRKRIAKD SGKTEQQVSQ LVAQIFQMRV
501: KMKNLMGAME GGANPAFTDL ADAMKAEQKG LPGTARRKKK AESRKKFVES ASSKPGPRGF GSGN

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.