CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G097520.1	Barley	cytosol	57.65	50.9
HORVU7Hr1G036330.1	Barley	cytosol	49.49	40.25
HORVU5Hr1G019120.2	Barley	cytosol	35.2	35.94
HORVU6Hr1G029680.1	Barley	cytosol	35.2	35.94
HORVU2Hr1G125480.2	Barley	cytosol	34.69	34.52
CDX93702	Canola	cytosol	85.71	33.94
CDY40616	Canola	cytosol	85.71	33.94
Bra014161.1-P	Field mustard	cytosol	85.71	33.87
CDX77276	Canola	cytosol	84.69	33.47
AT1G48900.1	Thale cress	cytosol	79.59	31.52
CDY36546	Canola	cytosol	76.53	31.32
CDY39632	Canola	cytosol	75.0	30.62
Solyc12g042740.1.1	Tomato	cytosol	73.98	29.06
PGSC0003DMT400001674	Potato	cytosol	73.47	28.97
VIT_09s0002g07290.t01	Wine grape	cytosol	72.96	28.89
PGSC0003DMT400073698	Potato	cytosol	73.47	28.86
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	72.45	28.69
KRH44479	Soybean	cytosol	71.94	28.48
GSMUA_Achr8P03120_001	Banana	cytosol	71.94	28.37
KRH23593	Soybean	cytosol	71.94	28.2
KRH09713	Soybean	cytosol	71.43	28.06
Os01t0772800-01	Rice	plasma membrane	69.39	27.42
Zm00001d043303_P001	Maize	cytosol	68.88	27.33
EES01544	Sorghum	cytosol	68.88	27.22
Zm00001d012652_P003	Maize	extracellular	69.39	27.2
HORVU2Hr1G020570.1	Barley	plasma membrane	68.88	27.16
TraesCS1B01G340600.1	Wheat	golgi, plastid	68.37	26.96
EES19782	Sorghum	cytosol	65.82	26.76
HORVU3Hr1G075590.1	Barley	cytosol	26.02	26.56
TraesCS1D01G329300.1	Wheat	cytosol	67.35	26.56
Zm00001d038661_P001	Maize	cytosol	65.31	26.56
HORVU1Hr1G077990.4	Barley	cytosol	67.86	26.39
Os05t0509500-01	Rice	plasma membrane	63.27	25.67
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	62.24	25.21
TraesCS1B01G340700.1	Wheat	cytosol	63.27	25.1
TraesCS3B01G342900.1	Wheat	cytosol	61.73	25.0
KXG37972	Sorghum	cytosol	56.63	24.89
KXG37974	Sorghum	cytosol	56.63	24.89
Solyc03g116810.2.1	Tomato	nucleus	73.98	24.58
KXG34125	Sorghum	cytosol	54.08	21.33
GSMUA_Achr9P25680_001	Banana	cytosol	44.39	19.95
CDY16472	Canola	cytosol	38.27	19.13
CDY17067	Canola	cytosol, nucleus	17.86	10.84
CDY46694	Canola	cytosol	16.84	10.65
CDY18901	Canola	plastid	18.37	9.97
CDY27360	Canola	plastid	18.37	9.81
CDX74765	Canola	plastid	18.37	9.78
CDY37064	Canola	plastid	18.37	9.78
CDY14165	Canola	plastid	10.71	9.33
CDY41424	Canola	plastid	25.0	8.67
CDX70273	Canola	plastid	25.0	8.66
CDY04905	Canola	plastid	23.98	8.33
CDY14166	Canola	plastid	23.98	8.33
CDY39221	Canola	cytosol, endoplasmic reticulum	18.88	6.02
CDX72255	Canola	cytosol, endoplasmic reticulum	18.88	6.01
CDY28196	Canola	endoplasmic reticulum	18.88	5.95
CDX68673	Canola	extracellular	18.88	5.89

Protein Annotations

Gene3D:1.20.120.140	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078FBA1	UniProt:A0A078FBA1	EnsemblPlants:CDY10656
ProteinID:CDY10656	ProteinID:CDY10656.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00048414001
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00963
InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	InterPro:Signal_recog_particl_SRP54_hlx
UniParc:UPI0004EDDB06	:	:	:	:	:

Description

BnaA05g17060DBnaA05g17060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBA1]

Coordinates

chrLK032005:-:403666..406174

Molecular Weight (calculated)

21996.9 Da

IEP (calculated)

6.500

GRAVY (calculated)

0.038

Length

196 amino acids

Sequence
(BLAST)

001: MVLAELGGQI ASALQKMSNV TIIDEKALNE CLKEITHALL HSDVSFPLVR EMQNNIKKIV NLEELAAGHN KRRIIEQAIF SELCKMLDPG KPAFKVRSFG
101: LLMFRCWACA FDQLKQNATK SRIPFYGSYT ESDPVKIAVE GVDTFKKENC DLIIVDTSGR HKQEATLFEE MCQVAEATVC SVVLEALFFL SGYCRL

Best Arabidopsis Sequence Match ( AT1G15310.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMNNV TIIDEKVLND FLNEITRALL QSDVSFGLVE KMQTNIKKIV NLDDLAAGHN KRLIIEQAIF KELCRMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK

Arabidopsis Description

SRP-54ASignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:Q56XJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.