Factsheet for TraesCS3D01G308700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G342900.1	Wheat	cytosol	97.93	97.93
TraesCS3A01G322800.1	Wheat	mitochondrion	96.28	96.28
HORVU3Hr1G075590.1	Barley	cytosol	37.81	95.31
HORVU2Hr1G097520.1	Barley	cytosol	41.53	90.54
HORVU6Hr1G029680.1	Barley	cytosol	35.74	90.1
HORVU5Hr1G019120.2	Barley	cytosol	35.74	90.1
HORVU7Hr1G036330.1	Barley	cytosol	44.42	89.21
HORVU2Hr1G125480.2	Barley	cytosol	36.16	88.83
Zm00001d043303_P001	Maize	cytosol	79.55	77.94
Os01t0772800-01	Rice	plasma membrane	79.75	77.82
EES01544	Sorghum	cytosol	79.34	77.42
Zm00001d012652_P003	Maize	extracellular	79.34	76.8
TraesCS1D01G329300.1	Wheat	cytosol	76.65	74.65
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	76.03	74.34
KRH44479	Soybean	cytosol	75.83	74.14
KRH23593	Soybean	cytosol	75.62	73.2
KRH09713	Soybean	cytosol	75.41	73.15
VIT_09s0002g07290.t01	Wine grape	cytosol	74.79	73.13
PGSC0003DMT400001674	Potato	cytosol	74.59	72.64
Solyc12g042740.1.1	Tomato	cytosol	74.79	72.55
PGSC0003DMT400073698	Potato	cytosol	73.97	71.74
CDY16472	Canola	cytosol	58.06	71.68
AT1G48900.1	Thale cress	cytosol	71.69	70.1
CDX77276	Canola	cytosol	70.87	69.15
Bra014161.1-P	Field mustard	cytosol	70.87	69.15
Bra018760.1-P	Field mustard	cytosol	70.25	68.69
CDY40616	Canola	cytosol	70.04	68.48
CDX93702	Canola	cytosol	70.04	68.48
AT1G15310.1	Thale cress	cytosol	66.94	67.64
CDY36546	Canola	cytosol	66.94	67.64
CDY39632	Canola	cytosol	66.94	67.5
Bra026145.1-P	Field mustard	cytosol	66.74	67.43
AT5G49500.1	Thale cress	cytosol	66.74	64.99
CDY10656	Canola	cytosol	25.21	62.24
Solyc03g116810.2.1	Tomato	nucleus	75.0	61.53
GSMUA_Achr9P25680_001	Banana	cytosol	46.28	51.38
CDY46694	Canola	cytosol	28.1	43.87
CDY17067	Canola	cytosol, nucleus	29.13	43.65
Bra014039.1-P	Field mustard	cytosol	34.5	40.63
AT5G66970.1	Thale cress	cytosol	14.46	40.0
TraesCS4D01G115600.1	Wheat	plastid	28.51	24.91
TraesCS4D01G115500.1	Wheat	plastid	27.69	24.19
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	16.94	13.53
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	17.77	13.31

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500
InterPro:IPR036891	HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978
PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540
InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	EnsemblPlantsGene:TraesCS3D01G308700	EnsemblPlants:TraesCS3D01G308700.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:422647345..422650294

Molecular Weight (calculated)

53024.9 Da

IEP (calculated)

9.749

GRAVY (calculated)

-0.209

Length

484 amino acids

Sequence
(BLAST)

001: MVLAQLGGSL SRALARMTSA TVVDEKVLGD CLNEITRALL QADVQFDMVR DMQASVKRAV DLGALAAGTD KRRVIKKAVF DELCNMLDAG KPAFAPKKGK
101: PCVVMFVGLQ GSGKTTTCMK YAHYHQKIGF KPALVCADTF RAGAFDQLKQ NATKIMVPFY GSYMESDPVK IAVEGVERFR KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVSE ATKPDLVIFV MDSSIGQAAF AQAQAFRQSV PVGAVIVTKM DGHAKGGGAL SAVAATKSPV IFIGTGEHKD ELEDFDVRPF VGRLLGMGDL
301: PGLLNKARQV VPTDQQPDLM KRLMEGNFTL RLMYEQFQNL GKIGSIGQIF SMLPGFSSEL MPQGHEKQGE AKIKRYMTMM DSMTDAELDS ADPKLMKESR
401: IVRIARGSGR PVKDVLDMLE EYKRLAKMWS NVIKRLRKSN KGNTNAQQIS KSLPPELLTQ IGGIGGLRSL LNQTVSKEMG GGDR

Best Arabidopsis Sequence Match ( AT1G15310.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMNNV TIIDEKVLND FLNEITRALL QSDVSFGLVE KMQTNIKKIV NLDDLAAGHN KRLIIEQAIF KELCRMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK

Arabidopsis Description

SRP-54ASignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:Q56XJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.