CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16472	Canola	cytosol	79.03	100.0
CDX93702	Canola	cytosol	96.98	97.17
CDY40616	Canola	cytosol	96.98	97.17
AT1G48900.1	Thale cress	cytosol	94.56	94.75
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	87.1	87.27
KRH44479	Soybean	cytosol	86.9	87.07
KRH23593	Soybean	cytosol	86.69	86.0
KRH09713	Soybean	cytosol	86.49	85.97
Solyc12g042740.1.1	Tomato	cytosol	86.09	85.57
VIT_09s0002g07290.t01	Wine grape	cytosol	85.28	85.45
GSMUA_Achr8P03120_001	Banana	cytosol	85.48	85.31
PGSC0003DMT400073698	Potato	cytosol	85.28	84.77
CDY10656	Canola	cytosol	33.47	84.69
PGSC0003DMT400001674	Potato	cytosol	84.68	84.51
CDY39632	Canola	cytosol	81.45	84.17
CDY36546	Canola	cytosol	81.25	84.13
Os01t0772800-01	Rice	plasma membrane	83.67	83.67
EES01544	Sorghum	cytosol	83.06	83.06
Zm00001d012652_P003	Maize	extracellular	83.06	82.4
Zm00001d043303_P001	Maize	cytosol	81.65	81.98
TraesCS1B01G340600.1	Wheat	golgi, plastid	79.44	79.28
HORVU2Hr1G020570.1	Barley	plasma membrane	79.44	79.28
TraesCS1D01G329300.1	Wheat	cytosol	79.23	79.07
HORVU6Hr1G029680.1	Barley	cytosol	30.44	78.65
HORVU5Hr1G019120.2	Barley	cytosol	30.44	78.65
HORVU3Hr1G075590.1	Barley	cytosol	30.04	77.6
HORVU1Hr1G077990.4	Barley	cytosol	78.83	77.58
HORVU2Hr1G125480.2	Barley	cytosol	30.65	77.16
HORVU7Hr1G036330.1	Barley	cytosol	35.48	73.03
Os05t0509500-01	Rice	plasma membrane	69.76	71.64
Solyc03g116810.2.1	Tomato	nucleus	84.68	71.19
TraesCS1B01G340700.1	Wheat	cytosol	70.77	71.05
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	69.15	70.87
TraesCS3B01G342900.1	Wheat	cytosol	68.55	70.25
EES19782	Sorghum	cytosol	67.94	69.92
HORVU2Hr1G097520.1	Barley	cytosol	31.25	69.82
Zm00001d038661_P001	Maize	cytosol	65.73	67.63
KXG37974	Sorghum	cytosol	58.27	64.8
KXG37972	Sorghum	cytosol	57.86	64.35
GSMUA_Achr9P25680_001	Banana	cytosol	50.4	57.34
KXG34125	Sorghum	cytosol	55.24	55.13
CDY46694	Canola	cytosol	26.61	42.58
CDY17067	Canola	cytosol, nucleus	27.62	42.41
CDY41424	Canola	plastid	26.81	23.54
CDX70273	Canola	plastid	26.81	23.5
CDY04905	Canola	plastid	26.61	23.4
CDY14166	Canola	plastid	26.61	23.4
CDY18901	Canola	plastid	16.73	22.99
CDX74765	Canola	plastid	16.73	22.55
CDY27360	Canola	plastid	16.53	22.34
CDY37064	Canola	plastid	16.53	22.28
CDY14165	Canola	plastid	8.06	17.78
CDY39221	Canola	cytosol, endoplasmic reticulum	17.34	13.98
CDX72255	Canola	cytosol, endoplasmic reticulum	17.34	13.96
CDY28196	Canola	endoplasmic reticulum	17.34	13.83
CDX68673	Canola	extracellular	17.34	13.69

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	GO:A0A078CJB4	InterPro:AAA+_ATPase
EnsemblPlants:CDX77276	ProteinID:CDX77276	ProteinID:CDX77276.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0016787	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00127999001	InterPro:IPR036891	HAMAP:MF_00306
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564
PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54
InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf
InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI0004EDAE9B	SEG:seg	:

Description

BnaC08g03210D

Coordinates

chrLK031810:+:732685..735793

Molecular Weight (calculated)

54895.3 Da

IEP (calculated)

9.546

GRAVY (calculated)

-0.275

Length

496 amino acids

Sequence
(BLAST)

001: MVLAELGGQI ASALQKMSNV TIIDEKALSE CLKEITRALL HSDVSFPLVR EMQSNIKKIV NLEELAAGHN KRRIIEQAIF SELCKMLDPG KPAFSPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKARIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAT
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQDV VPKDQQPELL EKLSQGNFTL RIMYDQFQNL LNMGPLSEVF SMLPGAAAQM MPKGHEKESQ AKIKRYMTMM DSMTNEELDS SNPKMFNESR
401: MMRIARGSGR MVREVMEMLE EYKRLAKMWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQFGGM GGLQSLMKQM GSGKDMMGMF GGGKDK

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.