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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • endoplasmic reticulum 3
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY39221 Canola cytosol, endoplasmic reticulum 97.73 97.89
CDY28196 Canola endoplasmic reticulum 87.66 86.82
CDX68673 Canola extracellular 88.31 86.62
GSMUA_Achr5P20650_001 Banana cytosol 47.08 86.05
AT4G30600.1 Thale cress endoplasmic reticulum 87.82 85.33
VIT_11s0037g00300.t01 Wine grape endoplasmic reticulum 77.27 77.27
Solyc12g009990.1.1 Tomato endoplasmic reticulum, extracellular 77.11 76.74
PGSC0003DMT400020462 Potato endoplasmic reticulum, extracellular 76.95 76.58
KRH54944 Soybean endoplasmic reticulum 76.46 75.6
GSMUA_Achr11P... Banana endoplasmic reticulum 68.83 75.31
KRH03040 Soybean endoplasmic reticulum 72.24 71.09
GSMUA_Achr11P... Banana cytosol, mitochondrion 54.87 71.01
EER93028 Sorghum cytosol, endoplasmic reticulum, mitochondrion, plastid 69.81 68.91
Zm00001d027293_P004 Maize cytosol, endoplasmic reticulum, mitochondrion, plastid 69.64 67.99
TraesCS5A01G534900.1 Wheat golgi 70.62 67.76
TraesCS4B01G367200.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plastid 70.78 67.6
TraesCS4D01G360300.1 Wheat cytosol, golgi, mitochondrion, plastid 70.62 67.34
KRH72313 Soybean cytosol 33.6 67.21
TraesCS6D01G089600.1 Wheat endoplasmic reticulum 61.2 62.21
TraesCS6A01G101200.1 Wheat endoplasmic reticulum 61.2 61.6
TraesCS6B01G129300.1 Wheat endoplasmic reticulum 60.71 61.51
EES17686 Sorghum endoplasmic reticulum, extracellular 58.28 61.05
HORVU6Hr1G018280.1 Barley cytosol, endoplasmic reticulum 60.88 59.24
CDY18901 Canola plastid 15.75 26.87
CDX74765 Canola plastid 15.91 26.63
CDY27360 Canola plastid 15.75 26.43
CDY37064 Canola plastid 15.75 26.36
CDY10656 Canola cytosol 6.01 18.88
CDY36546 Canola cytosol 13.64 17.54
CDY39632 Canola cytosol 13.64 17.5
CDX93702 Canola cytosol 13.96 17.37
CDY40616 Canola cytosol 13.96 17.37
CDX77276 Canola cytosol 13.96 17.34
CDY16472 Canola cytosol 10.88 17.09
CDY46694 Canola cytosol 8.44 16.77
CDY04905 Canola plastid 15.1 16.49
CDX70273 Canola plastid 15.1 16.43
CDY17067 Canola cytosol, nucleus 8.6 16.41
CDY41424 Canola plastid 14.94 16.28
CDY14166 Canola plastid 14.77 16.13
CDY14165 Canola plastid 5.68 15.56
Protein Annotations
Gene3D:1.20.120.140MapMan:23.3.1.2.1Gene3D:3.30.450.60Gene3D:3.40.50.300GO:A0A078C5Y9InterPro:AAA+_ATPase
EnsemblPlants:CDX72255ProteinID:CDX72255ProteinID:CDX72255.1GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0003924GO:GO:0005047GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005785GO:GO:0006614GO:GO:0006810
GO:GO:0006886GO:GO:0008150GO:GO:0016020GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00099724001InterPro:Longin-like_dom_sf
InterPro:P-loop_NTPasePFAM:PF00448PFAM:PF02881PFAM:PF04086ScanProsite:PS00300PANTHER:PTHR43134
PANTHER:PTHR43134:SF4SMART:SM00382SMART:SM00962SMART:SM00963InterPro:SRP/SRP_NInterPro:SRP54_GTPase_dom
SUPFAM:SSF47364SUPFAM:SSF52540SUPFAM:SSF64356InterPro:Sig_recog_particle_rcpt_asu_NInterPro:Signal_recog_particl_SRP54_hlxUniParc:UPI0004EBCD3F
SEG:seg:::::
Description
BnaC07g42770D
Coordinates
chrLK031796:-:276213..278875
Molecular Weight (calculated)
68188.4 Da
IEP (calculated)
7.174
GRAVY (calculated)
-0.473
Length
616 amino acids
Sequence
(BLAST)
001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGEVSFNY GAYTLKWTFH NDLGLVFVAV YQKILQLLYV DDLLSMVKQS FSEIYDPKRM
101: RYDDFDETFR QLRVEAEARA EEMKRTKQVV KPLNGVKKQG QVSKEETKKS NGEKKDDEGK VSSVSNGNHK MEDDVANGKE NSADNNNNNN NSVGVDVSKL
201: AKLRSKGVRG RGGLRKADSI GSNKGSSKVE PPKKATKKNR VWDDAAAAPK QEEKLDFTDE HGDNGHVDVV AAADQGESMM DKEEVFSSDS ESEDDDEPIS
301: DEKPEAKKKG WFSSVFQSIT GKANLERTDL EPALKALKER LMTKNVAEEI AEKLCESVEA SLEGKKLASF TRISSTVQGA MEEALIRILT PRRSIDIMRD
401: VHAAKEQRRP YVVVFVGVNG VGKSTNLAKV AYWLQQHKVS VMMAACDTFR SGAVEQLRTH ARRLQIPIFE KGYEKDPAVV AKEAIQEATR NGSDVVLVDT
501: AGRMQDNEPL MRALSKLINL NKPDLVLFVG EALVGNDAVD QLSKFNQKLS DLSTSGSTRL IDGILLTKFD TIDDKVGAAL SMVYISGAPV MFVGCGQSYT
601: DLKKLNVKAI VKTLLK
Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)
001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK
Arabidopsis Description
AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.