Factsheet for TraesCS6B01G129300.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 3
endoplasmic reticulum 5
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	95.23	95.54
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	94.24	93.63
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	91.78	88.15
GSMUA_Achr5P20650_001	Banana	cytosol	45.89	82.79
GSMUA_Achr11P...	Banana	endoplasmic reticulum	63.16	68.21
EES17686	Sorghum	endoplasmic reticulum, extracellular	64.8	67.01
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	69.74	65.74
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	51.32	65.55
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	64.8	63.96
KRH72313	Soybean	cytosol	31.58	62.34
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	62.5	61.39
KRH54944	Soybean	endoplasmic reticulum	62.83	61.32
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	62.17	61.07
KRH03040	Soybean	endoplasmic reticulum	62.83	61.02
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	61.51	60.91
CDX72255	Canola	cytosol, endoplasmic reticulum	61.51	60.71
CDY39221	Canola	cytosol, endoplasmic reticulum	61.18	60.49
CDY28196	Canola	endoplasmic reticulum	61.51	60.13
Bra011203.1-P	Field mustard	endoplasmic reticulum	61.51	60.13
AT4G30600.1	Thale cress	endoplasmic reticulum	62.66	60.09
CDX68673	Canola	extracellular	62.01	60.03
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	48.19	55.6
TraesCS3B01G561300.1	Wheat	plastid	14.97	25.49
TraesCS4B01G117800.1	Wheat	plastid	16.78	18.41
TraesCS4B01G117900.1	Wheat	plastid	16.61	16.97
TraesCS1B01G340700.1	Wheat	cytosol	13.65	16.8
TraesCS1B01G340600.1	Wheat	golgi, plastid	13.65	16.7
TraesCS3B01G342900.1	Wheat	cytosol	12.99	16.32

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005047	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005785
GO:GO:0006614	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787
InterPro:Longin-like_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF04086	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N	InterPro:Signal_recog_particl_SRP54_hlx
EnsemblPlantsGene:TraesCS6B01G129300	EnsemblPlants:TraesCS6B01G129300.1	TIGR:cd03115	SEG:seg	:	:

Description

No Description!

Coordinates

chr6B:-:125408710..125410806

Molecular Weight (calculated)

65451.9 Da

IEP (calculated)

8.418

GRAVY (calculated)

-0.354

Length

608 amino acids

Sequence
(BLAST)

001: MLEELLIFTR GGLILWSLAG AAAALKGSPI DALVRSFLLE GRFASAGFTH GPHALRWAYD NALGLVFVAV YRRVLHLLYV DDLLAAVSAD FARIYEPRRA
101: SYDEFGEMFR QLHLEAEARA SRPPSVSAKP APAASSPGAL QPHGGGGGGG GGEGEKTGDE SGKDDSDGEP SRQEKHNSAA DGSVNGLEEN SHTGHGGGVV
201: KREEEGGPNN GAFNLENIKK IFFPHNDKGG DKPKRPVHKD KKPRPGRDKK PVPEDKKPSE KKLDYSNPAD HSGGAGKQTA VNQGKSMMDK DEAVRSTAKD
301: GWFSSMFRSI AGSNAELKES DLQPALKSLK DRLMTKNVAE EIAEKLCESV AASLLGKKLG SFTRISSSVQ ATMEEALVRI LTPRRSIDVL RDVHAAKDRG
401: TPYVIVFVGV NGVGKSTNLA KVAYWLLQHD LSVTLAACDT FRSGAVEQLR THARRLQIPI FEKGYERDPA VVAKGAIQEA TRNKSDVVLV DTAGRMQDNE
501: PLMRALSKLI NLNNPDLVLF VGEALVGNDA VDQLTKFSQK LTDLSTAPTA RSIDGILLTK FDTIDDKVGA ALSMVYVSGA PVMFVGCGQS YTDLKKLNVK
601: SIVNTLLE

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.