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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • endoplasmic reticulum 3
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • cytosol 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014811.1-P Field mustard cytosol, endoplasmic reticulum 84.85 98.86
CDY39221 Canola cytosol, endoplasmic reticulum 98.05 97.89
Bra011203.1-P Field mustard endoplasmic reticulum 88.11 86.98
GSMUA_Achr5P20650_001 Banana cytosol 47.39 86.35
AT4G30600.1 Thale cress endoplasmic reticulum 88.27 85.49
VIT_11s0037g00300.t01 Wine grape endoplasmic reticulum 77.36 77.11
Solyc12g009990.1.1 Tomato endoplasmic reticulum, extracellular 77.04 76.41
PGSC0003DMT400020462 Potato endoplasmic reticulum, extracellular 76.87 76.25
KRH54944 Soybean endoplasmic reticulum 76.38 75.28
GSMUA_Achr11P... Banana endoplasmic reticulum 68.89 75.13
KRH03040 Soybean endoplasmic reticulum 72.64 71.25
GSMUA_Achr11P... Banana cytosol, mitochondrion 55.05 71.01
EER93028 Sorghum cytosol, endoplasmic reticulum, mitochondrion, plastid 70.03 68.91
Zm00001d027293_P004 Maize cytosol, endoplasmic reticulum, mitochondrion, plastid 69.87 67.99
KRH72313 Soybean cytosol 33.88 67.53
TraesCS5A01G534900.1 Wheat golgi 70.52 67.45
TraesCS4B01G367200.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plastid 70.85 67.44
TraesCS4D01G360300.1 Wheat cytosol, golgi, mitochondrion, plastid 70.68 67.18
TraesCS6D01G089600.1 Wheat endoplasmic reticulum 61.4 62.21
TraesCS6A01G101200.1 Wheat endoplasmic reticulum 61.4 61.6
TraesCS6B01G129300.1 Wheat endoplasmic reticulum 60.91 61.51
EES17686 Sorghum endoplasmic reticulum, extracellular 58.47 61.05
HORVU6Hr1G018280.1 Barley cytosol, endoplasmic reticulum 61.07 59.24
Bra039315.1-P Field mustard plastid 14.01 27.3
Bra004937.1-P Field mustard plastid 16.12 26.9
Bra018760.1-P Field mustard cytosol 14.17 17.58
Bra014161.1-P Field mustard cytosol 14.01 17.34
Bra026145.1-P Field mustard cytosol 13.19 16.91
Bra009499.1-P Field mustard plastid 15.47 16.78
Bra028809.1-P Field mustard plastid 14.82 16.13
Bra014039.1-P Field mustard cytosol 10.59 15.82
Protein Annotations
Gene3D:1.20.120.140MapMan:23.3.1.2.1Gene3D:3.30.450.60Gene3D:3.40.50.300InterPro:AAA+_ATPaseEnsemblPlantsGene:Bra024060
EnsemblPlants:Bra024060.1EnsemblPlants:Bra024060.1-PGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924
GO:GO:0005047GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005785GO:GO:0006614GO:GO:0006810GO:GO:0006886
GO:GO:0008150GO:GO:0016020GO:GO:0016192GO:GO:0016787InterPro:Longin-like_dom_sfUniProt:M4E5K6
InterPro:P-loop_NTPasePFAM:PF00448PFAM:PF02881PFAM:PF04086ScanProsite:PS00300PANTHER:PTHR43134
PANTHER:PTHR43134:SF4SMART:SM00382SMART:SM00962SMART:SM00963InterPro:SRP/SRP_NInterPro:SRP54_GTPase_dom
SUPFAM:SSF47364SUPFAM:SSF52540SUPFAM:SSF64356InterPro:Sig_recog_particle_rcpt_asu_NInterPro:Signal_recog_particl_SRP54_hlxUniParc:UPI0002540E31
SEG:seg:::::
Description
AT4G30600 (E=2e-266) | signal recognition particle receptor alpha subunit family protein
Coordinates
chrA03:-:27906379..27908930
Molecular Weight (calculated)
67990.2 Da
IEP (calculated)
7.496
GRAVY (calculated)
-0.467
Length
614 amino acids
Sequence
(BLAST)
001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGEVSFNY GAYTLKWTFH NDLGLVFVAV YQKILQLLYV DDLLSIVKQS FSEMYDPKRM
101: RYDDFDETFR QLRVEAEARA EEMKRTKQVA KPLNGVKKQG QVSKEETKKS NGEKKDDGDK VSVLSNGNHK MEDDVANGKE NSADNNNNSV GVDVSKLAKL
201: RSKGVRGRGG LRKADSLGSN KGSSKVVEPP KKATKKNRVW DDAAAAPKQE EEKLDFTDEN GDNGHVDVVA AADQGESMMD KEEVFSSDSE SEDDEPRSDE
301: KPEAKKKGWF SSVFQSITGK ANLERTDLEP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLASFTR ISSTVQGAME EALIRILTPR RSIDIMRDVH
401: AAKEQRRPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK EAIQEATRNG SDVVLVDTAG
501: RMQDNEPLMR ALSKLINLNK PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNTRLID GILLTKFDTI DDKVGAALSM VYISGAPVMF VGCGQSYTDL
601: KKLNVKAIVK TLLK
Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)
001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK
Arabidopsis Description
AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.