Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra014811.1-P | Field mustard | cytosol, endoplasmic reticulum | 84.85 | 98.86 |
CDY39221 | Canola | cytosol, endoplasmic reticulum | 98.05 | 97.89 |
Bra011203.1-P | Field mustard | endoplasmic reticulum | 88.11 | 86.98 |
GSMUA_Achr5P20650_001 | Banana | cytosol | 47.39 | 86.35 |
AT4G30600.1 | Thale cress | endoplasmic reticulum | 88.27 | 85.49 |
VIT_11s0037g00300.t01 | Wine grape | endoplasmic reticulum | 77.36 | 77.11 |
Solyc12g009990.1.1 | Tomato | endoplasmic reticulum, extracellular | 77.04 | 76.41 |
PGSC0003DMT400020462 | Potato | endoplasmic reticulum, extracellular | 76.87 | 76.25 |
KRH54944 | Soybean | endoplasmic reticulum | 76.38 | 75.28 |
GSMUA_Achr11P... | Banana | endoplasmic reticulum | 68.89 | 75.13 |
KRH03040 | Soybean | endoplasmic reticulum | 72.64 | 71.25 |
GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 55.05 | 71.01 |
EER93028 | Sorghum | cytosol, endoplasmic reticulum, mitochondrion, plastid | 70.03 | 68.91 |
Zm00001d027293_P004 | Maize | cytosol, endoplasmic reticulum, mitochondrion, plastid | 69.87 | 67.99 |
KRH72313 | Soybean | cytosol | 33.88 | 67.53 |
TraesCS5A01G534900.1 | Wheat | golgi | 70.52 | 67.45 |
TraesCS4B01G367200.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, plastid | 70.85 | 67.44 |
TraesCS4D01G360300.1 | Wheat | cytosol, golgi, mitochondrion, plastid | 70.68 | 67.18 |
TraesCS6D01G089600.1 | Wheat | endoplasmic reticulum | 61.4 | 62.21 |
TraesCS6A01G101200.1 | Wheat | endoplasmic reticulum | 61.4 | 61.6 |
TraesCS6B01G129300.1 | Wheat | endoplasmic reticulum | 60.91 | 61.51 |
EES17686 | Sorghum | endoplasmic reticulum, extracellular | 58.47 | 61.05 |
HORVU6Hr1G018280.1 | Barley | cytosol, endoplasmic reticulum | 61.07 | 59.24 |
Bra039315.1-P | Field mustard | plastid | 14.01 | 27.3 |
Bra004937.1-P | Field mustard | plastid | 16.12 | 26.9 |
Bra018760.1-P | Field mustard | cytosol | 14.17 | 17.58 |
Bra014161.1-P | Field mustard | cytosol | 14.01 | 17.34 |
Bra026145.1-P | Field mustard | cytosol | 13.19 | 16.91 |
Bra009499.1-P | Field mustard | plastid | 15.47 | 16.78 |
Bra028809.1-P | Field mustard | plastid | 14.82 | 16.13 |
Bra014039.1-P | Field mustard | cytosol | 10.59 | 15.82 |
Protein Annotations
Gene3D:1.20.120.140 | MapMan:23.3.1.2.1 | Gene3D:3.30.450.60 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | EnsemblPlantsGene:Bra024060 |
EnsemblPlants:Bra024060.1 | EnsemblPlants:Bra024060.1-P | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
GO:GO:0005047 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005785 | GO:GO:0006614 | GO:GO:0006810 | GO:GO:0006886 |
GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0016787 | InterPro:Longin-like_dom_sf | UniProt:M4E5K6 |
InterPro:P-loop_NTPase | PFAM:PF00448 | PFAM:PF02881 | PFAM:PF04086 | ScanProsite:PS00300 | PANTHER:PTHR43134 |
PANTHER:PTHR43134:SF4 | SMART:SM00382 | SMART:SM00962 | SMART:SM00963 | InterPro:SRP/SRP_N | InterPro:SRP54_GTPase_dom |
SUPFAM:SSF47364 | SUPFAM:SSF52540 | SUPFAM:SSF64356 | InterPro:Sig_recog_particle_rcpt_asu_N | InterPro:Signal_recog_particl_SRP54_hlx | UniParc:UPI0002540E31 |
SEG:seg | : | : | : | : | : |
Description
AT4G30600 (E=2e-266) | signal recognition particle receptor alpha subunit family protein
Coordinates
chrA03:-:27906379..27908930
Molecular Weight (calculated)
67990.2 Da
IEP (calculated)
7.496
GRAVY (calculated)
-0.467
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGEVSFNY GAYTLKWTFH NDLGLVFVAV YQKILQLLYV DDLLSIVKQS FSEMYDPKRM
101: RYDDFDETFR QLRVEAEARA EEMKRTKQVA KPLNGVKKQG QVSKEETKKS NGEKKDDGDK VSVLSNGNHK MEDDVANGKE NSADNNNNSV GVDVSKLAKL
201: RSKGVRGRGG LRKADSLGSN KGSSKVVEPP KKATKKNRVW DDAAAAPKQE EEKLDFTDEN GDNGHVDVVA AADQGESMMD KEEVFSSDSE SEDDEPRSDE
301: KPEAKKKGWF SSVFQSITGK ANLERTDLEP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLASFTR ISSTVQGAME EALIRILTPR RSIDIMRDVH
401: AAKEQRRPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK EAIQEATRNG SDVVLVDTAG
501: RMQDNEPLMR ALSKLINLNK PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNTRLID GILLTKFDTI DDKVGAALSM VYISGAPVMF VGCGQSYTDL
601: KKLNVKAIVK TLLK
101: RYDDFDETFR QLRVEAEARA EEMKRTKQVA KPLNGVKKQG QVSKEETKKS NGEKKDDGDK VSVLSNGNHK MEDDVANGKE NSADNNNNSV GVDVSKLAKL
201: RSKGVRGRGG LRKADSLGSN KGSSKVVEPP KKATKKNRVW DDAAAAPKQE EEKLDFTDEN GDNGHVDVVA AADQGESMMD KEEVFSSDSE SEDDEPRSDE
301: KPEAKKKGWF SSVFQSITGK ANLERTDLEP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLASFTR ISSTVQGAME EALIRILTPR RSIDIMRDVH
401: AAKEQRRPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK EAIQEATRNG SDVVLVDTAG
501: RMQDNEPLMR ALSKLINLNK PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNTRLID GILLTKFDTI DDKVGAALSM VYISGAPVMF VGCGQSYTDL
601: KKLNVKAIVK TLLK
001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK
Arabidopsis Description
AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.