Factsheet for TraesCS4B01G367200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G534900.1	Wheat	golgi	95.35	95.79
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	95.81	95.67
GSMUA_Achr5P20650_001	Banana	cytosol	47.44	90.8
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	78.45	81.09
GSMUA_Achr11P...	Banana	endoplasmic reticulum	70.08	80.28
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	77.98	79.71
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	55.5	75.21
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	71.32	74.68
KRH54944	Soybean	endoplasmic reticulum	70.08	72.55
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	69.15	72.05
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	68.99	71.89
KRH03040	Soybean	endoplasmic reticulum	68.99	71.09
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	67.44	70.85
CDX72255	Canola	cytosol, endoplasmic reticulum	67.6	70.78
CDY39221	Canola	cytosol, endoplasmic reticulum	67.13	70.41
AT4G30600.1	Thale cress	endoplasmic reticulum	68.99	70.19
Bra011203.1-P	Field mustard	endoplasmic reticulum	67.6	70.1
CDY28196	Canola	endoplasmic reticulum	67.6	70.1
CDX68673	Canola	extracellular	68.06	69.9
KRH72313	Soybean	cytosol	33.33	69.81
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	65.74	69.74
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	54.11	66.22
TraesCS3B01G561300.1	Wheat	plastid	15.19	27.45
TraesCS1B01G340700.1	Wheat	cytosol	13.95	18.22
TraesCS4B01G117800.1	Wheat	plastid	15.35	17.87
TraesCS3B01G342900.1	Wheat	cytosol	13.33	17.77
TraesCS1B01G340600.1	Wheat	golgi, plastid	13.64	17.71
TraesCS4B01G117900.1	Wheat	plastid	15.66	16.97

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005047	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005785
GO:GO:0006614	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787
InterPro:Longin-like_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF04086	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N	InterPro:Signal_recog_particl_SRP54_hlx
EnsemblPlantsGene:TraesCS4B01G367200	EnsemblPlants:TraesCS4B01G367200.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:+:654263410..654267522

Molecular Weight (calculated)

69761.2 Da

IEP (calculated)

8.962

GRAVY (calculated)

-0.457

Length

645 amino acids

Sequence
(BLAST)

001: MLEELLIFTR GGLILWSSCR ALGGAALLKG SPIDALIRSC LLEERSGDAG FAKDAYALKW TFNNDLGLVF VAVYQRMLHL LYVDDLLAAV RKEFSQIYNP
101: KRVSYDDLFT EKFRQLHLEA EARAEAMKKS RQQPANPSSG AGRASGGPAG KKLGPNARSR GGGGAGKKNS GSGKDDSDGD SGKEQNGGFT ANGGSVAKGG
201: HENGSTKDSS RTAARAVVAD SDGKENGDPN DGAFDVNTLR KKTGGKKGGG GKKNDVKKAA KAEPKKAVKQ MRVWDDKPPK SEKLDFTDPA DERGEEVIEK
301: VLTDQGDSMM DKDEDLSSDS EDEEDEGEEN AQAGQKKKGW FSSMFKSIAG NNVLEKSDLQ PALKALKDRL MTKNVAEEIA EKLCESVAAS LEGKKLGSFT
401: RISSTVQTAM EEALLRILTP RRSIDILRDV QAAKERGKPY VVVFVGVNGV GKSTNLAKVA YWLLQHNLSV MMAACDTFRS GAVEQLRTHA RRLQIPIFEK
501: GYEKDPAVVA KEAIQEATRN KSDVVLVDTA GRMQDNEPLM RALSKLINLN KPDLVLFVGE ALVGNDAVDQ LNKFNQKLAD LSTVPTARLI DGILLTKFDT
601: IDDKVGAALS MVYISGSPVM FVGCGQSYTD LKKLNVKSIV KTLLK

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.