Factsheet for Bra014811.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
endoplasmic reticulum 3
cytosol 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, mitochondrion
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	98.86	84.85
CDY39221	Canola	cytosol, endoplasmic reticulum	96.58	82.76
Bra011203.1-P	Field mustard	endoplasmic reticulum	85.39	72.35
AT4G30600.1	Thale cress	endoplasmic reticulum	85.77	71.29
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	74.0	63.31
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	73.81	62.84
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	73.62	62.68
KRH54944	Soybean	endoplasmic reticulum	72.68	61.48
GSMUA_Achr5P20650_001	Banana	cytosol	38.9	60.83
GSMUA_Achr11P...	Banana	endoplasmic reticulum	63.95	59.86
KRH03040	Soybean	endoplasmic reticulum	69.07	58.15
KRH72313	Soybean	cytosol	33.59	57.47
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	65.46	55.29
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	65.28	54.52
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	66.22	54.11
TraesCS5A01G534900.1	Wheat	golgi	65.84	54.05
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	66.03	53.87
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	48.2	53.36
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	56.17	48.84
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	56.17	48.37
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	55.6	48.19
EES17686	Sorghum	endoplasmic reticulum, extracellular	53.51	47.96
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	55.79	46.45
Bra039315.1-P	Field mustard	plastid	12.52	20.95
Bra004937.1-P	Field mustard	plastid	13.85	19.84
Bra009499.1-P	Field mustard	plastid	12.33	11.48
Bra028809.1-P	Field mustard	plastid	11.95	11.17
Bra018760.1-P	Field mustard	cytosol	10.44	11.11
Bra014161.1-P	Field mustard	cytosol	10.25	10.89
Bra026145.1-P	Field mustard	cytosol	9.3	10.23
Bra014039.1-P	Field mustard	cytosol	7.4	9.49

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EnsemblPlantsGene:Bra014811
EnsemblPlants:Bra014811.1	EnsemblPlants:Bra014811.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005047	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005785	GO:GO:0006614	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0016787	InterPro:Longin-like_dom_sf	UniProt:M4DE90
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF04086	PANTHER:PTHR43134	PANTHER:PTHR43134:SF4
SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364
SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N	InterPro:Signal_recog_particl_SRP54_hlx	UniParc:UPI0002544EBD	SEG:seg

Description

AT4G30600 (E=2e-212) | signal recognition particle receptor alpha subunit family protein

Coordinates

chrA04:+:3326283..3328394

Molecular Weight (calculated)

58778.8 Da

IEP (calculated)

6.811

GRAVY (calculated)

-0.591

Length

527 amino acids

Sequence
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGEVSFNY GAYTLKWTFH NDLGLVFVAV YQKILQLLYV DDLLSIVKQS FSEMYDPKRM
101: RYDDFDETFR QLRVEAEARA EEMKRTKQVA KPLNGVKKQG QVSKEETKKS NGEKKDDGDK VSVLSNGNHK MEDDVANGKE NSADNNNNSV GVDVSKLAKL
201: RSKGVRGRGG LRKADSLGSN KGSSKVVEPP KKATKKNRVW DDAAAAPKQE EEKLDFTDEN GDNGHVDVVA AADQGESMMD KEEVFSSDSE SEDDEPRSDE
301: KPEAKKKGWF SSVFQSITGK ANLERTDLEP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLASFTR ISSTVQGAME EALIRILTPR RSIDIMRDVH
401: AAKEQRRPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK EAIQEATRNG SDVVLVDTAG
501: RMQDNEPLMR ALSKLESMLS SYILNYT

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.