Factsheet for PGSC0003DMT400020462

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
mitochondrion 4
extracellular 2
cytosol 2
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	cytosol, mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	99.19	99.19
GSMUA_Achr5P20650_001	Banana	cytosol	47.82	87.83
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	82.88	83.28
GSMUA_Achr11P...	Banana	endoplasmic reticulum	71.73	78.86
KRH54944	Soybean	endoplasmic reticulum	78.84	78.33
AT4G30600.1	Thale cress	endoplasmic reticulum	80.13	78.23
CDX72255	Canola	cytosol, endoplasmic reticulum	76.58	76.95
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	76.25	76.87
CDY39221	Canola	cytosol, endoplasmic reticulum	75.93	76.42
CDX68673	Canola	extracellular	76.58	75.48
Bra011203.1-P	Field mustard	endoplasmic reticulum	75.77	75.4
CDY28196	Canola	endoplasmic reticulum	75.77	75.4
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	57.84	75.21
KRH03040	Soybean	endoplasmic reticulum	75.61	74.76
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	62.68	73.62
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	71.89	71.31
KRH72313	Soybean	cytosol	35.22	70.78
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	71.73	70.36
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	71.89	68.99
TraesCS5A01G534900.1	Wheat	golgi	71.24	68.69
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	71.41	68.42
EES17686	Sorghum	endoplasmic reticulum, extracellular	59.77	62.93
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	61.39	62.71
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	61.87	62.58
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	61.07	62.17
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	61.23	59.87
PGSC0003DMT400071384	Potato	plastid	15.83	26.63
PGSC0003DMT400001674	Potato	cytosol	13.73	17.1
PGSC0003DMT400073698	Potato	cytosol	13.73	17.03
PGSC0003DMT400022884	Potato	plastid	14.7	16.28

Protein Annotations

Gene3D:1.20.120.140	EntrezGene:102596993	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005047	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005785	GO:GO:0006614	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020
GO:GO:0016192	GO:GO:0016787	InterPro:Longin-like_dom_sf	UniProt:M1ADI7	InterPro:P-loop_NTPase	PFAM:PF00448
PFAM:PF02881	PFAM:PF04086	EnsemblPlantsGene:PGSC0003DMG400007905	PGSC:PGSC0003DMG400007905	EnsemblPlants:PGSC0003DMT400020462	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N	InterPro:Signal_recog_particl_SRP54_hlx
UniParc:UPI00029568D1	RefSeq:XP_006350106.1	SEG:seg	:	:	:

Description

Signal recognition particle receptor alpha subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400007905]

Coordinates

chr12:-:2361932..2366921

Molecular Weight (calculated)

68046.4 Da

IEP (calculated)

8.500

GRAVY (calculated)

-0.455

Length

619 amino acids

Sequence
(BLAST)

001: MLEQLLIFTR GGLILWTCKE LGNALRGSPI DTLIRSCLLE ERSGAASFNY DVPGAAYTLK WTFHNDLGLV FVAVYQKILH LLYVDELLSM VKQEFSEIYD
101: PKRTVYNEFD NVFQQLRKEA EARAEEMKKS KQVSKPVNHN LGKKQGQVQK GIMDGGNQKK SGAESGNDSG DGDKVNSRAM ENGNGRSKGS KENGVVQANG
201: KENRSSDSGA FDVNKLQKLR AKGGKKTDTI VKDSKAEPTK KAKKNRVWDD SPKESKLDFT DPMCENANGN TAVVEAVQGE SMMDKEEIVS SDSETEEDEE
301: PGKDNKVEAK KKGWFSSMFQ SIAGKANLDK ADLEPALKAL KDRLMTKNVA EEIAEKLCES VAASLEGKKL GSFTRISSTV QAAMEDALVR ILTPKRSIDI
401: LRDVHAAKEQ GKPYVVVFVG VNGVGKSTNL AKVAYWLQQH KVNVMMAACD TFRSGAVEQL RTHSRRLQVP IFEKGYEKDP AIVAKEAIQE ANRNGSDVVL
501: VDTAGRMQDN EPLMRALSKL IYVNSPDLIL FVGEALVGND AVDQLSKFNQ KLGDLSPSPN PRLIDGILLT KFDTIDDKVG AALSMVYISG APVMFVGCGQ
601: SYTDLKKLNV KSIVKTLLK

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.