Factsheet for PGSC0003DMT400071384

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001063
PGSC0003DMT400001405
PGSC0003DMT400003274
PGSC0003DMT400022884
PGSC0003DMT400063189

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45770.1	PGSC0003DMT400001063	AT2G28800.1	14517205
AT2G45770.1	PGSC0003DMT400003274	AT2G47450.1	14517205
AT2G45770.1	PGSC0003DMT400001405	AT3G27960.1	21798944
AT2G45770.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT2G45770.1	PGSC0003DMT400022884	AT5G03940.1	14517205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091580.2.1	Tomato	plastid	98.64	98.64
VIT_15s0048g02080.t01	Wine grape	plastid	81.52	81.74
KRH65131	Soybean	plastid	79.89	79.03
KRH48224	Soybean	plastid	79.62	78.76
CDY18901	Canola	plastid	76.36	77.84
AT2G45770.1	Thale cress	plastid	76.36	76.78
CDX74765	Canola	plastid	76.36	76.36
CDY37064	Canola	plastid	76.36	76.36
Bra004937.1-P	Field mustard	plastid	76.09	76.09
Bra039315.1-P	Field mustard	plastid	64.95	75.87
CDY27360	Canola	plastid	75.27	75.48
GSMUA_Achr11P...	Banana	plastid	77.45	74.61
TraesCS3B01G561300.1	Wheat	plastid	71.47	73.67
TraesCSU01G058200.1	Wheat	plastid	72.01	73.61
TraesCS3A01G498300.1	Wheat	plastid	71.2	72.98
Os01t0958100-01	Rice	plastid	70.11	71.07
EES04254	Sorghum	plastid	70.38	70.77
HORVU3Hr1G110160.4	Barley	mitochondrion	72.01	66.42
Zm00001d042044_P001	Maize	plastid	70.11	60.14
PGSC0003DMT400022884	Potato	plastid	26.09	17.17
PGSC0003DMT400001674	Potato	cytosol	21.74	16.1
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	26.63	15.83
PGSC0003DMT400073698	Potato	cytosol	21.47	15.83

Protein Annotations

Gene3D:1.20.120.140	EntrezGene:102585654	MapMan:23.1.7.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	UniProt:M1CNP0	HAMAP:MF_00920	InterPro:P-loop_NTPase
PFAM:PF00448	PFAM:PF02881	EnsemblPlantsGene:PGSC0003DMG400027773	PGSC:PGSC0003DMG400027773	EnsemblPlants:PGSC0003DMT400071384	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF2	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54_GTPase_dom	InterPro:SR_rcpt_FtsY	SUPFAM:SSF47364	SUPFAM:SSF52540	InterPro:Signal_recog_particl_SRP54_hlx	TIGRFAMs:TIGR00064
UniParc:UPI0002965C1E	RefSeq:XP_006339450.1	SEG:seg	:	:	:

Description

Cell division protein ftsy [Source:PGSC_GENE;Acc:PGSC0003DMG400027773]

Coordinates

chr1:-:70996061..71003680

Molecular Weight (calculated)

39859.4 Da

IEP (calculated)

8.188

GRAVY (calculated)

0.017

Length

368 amino acids

Sequence
(BLAST)

001: MASTLSSRLP YLPSKPVFPP SNSGSTLLHF TSKTWFDQSR FRCSAGQTGF FTKLGRLLKE KAKSDVEKLF SGFSKTRDNL AVIDELLLYW NLSDTDRVLD
101: ELEEVLLVAD FGPKITIKIV ESLREDIYAG KIKSGSEIKS VLKKSILDLL TSKAPKTELS LGFRKPAVIM IVGVNGGGKT TSLGKLANRL KREGAKILLA
201: AGDTFRAAAS DQLEIWAERT GCEIVVAEKE KAKASSVISQ AVKRGKEEGF DIVLCDTSGR LHTNYSLMEE LVACKKVVSK IVNGAPNEIL LVLDGTTGLN
301: MLPQAREFNE VVGITGLILT KLDGSARGGC VVSVVDELGI PVKFVGVGEG VDDLQPFNAE EFVNAIFP

Best Arabidopsis Sequence Match ( AT2G45770.1 )
(BLAST)

001: MATSSAHLSF LAGRISPFSS ERIGLFPLRG EFRPRMTRFR CSAGPSGFFT RLGRLIKEKA KSDVEKVFSG FSKTRENLAV IDELLLFWNL AETDRVLDEL
101: EEALLVSDFG PKITVRIVER LREDIMSGKL KSGSEIKDAL KESVLEMLAK KNSKTELQLG FRKPAVIMIV GVNGGGKTTS LGKLAHRLKN EGTKVLMAAG
201: DTFRAAASDQ LEIWAERTGC EIVVAEGDKA KAATVLSKAV KRGKEEGYDV VLCDTSGRLH TNYSLMEELI ACKKAVGKIV SGAPNEILLV LDGNTGLNML
301: PQAREFNEVV GITGLILTKL DGSARGGCVV SVVEELGIPV KFIGVGEAVE DLQPFDPEAF VNAIFS

Arabidopsis Description

CPFTSYCell division protein FtsY homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80842]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.