CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
EES07517
EES16662
KXG27759
KXG31875
OQU93303

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45770.1	KXG31875	AT2G28800.1	14517205
AT2G45770.1	OQU93303	AT2G47450.1	14517205
AT2G45770.1	EES05647	AT3G27960.1	21798944
AT2G45770.1	EES07517	AT3G48150.1	21798944
AT2G45770.1	EES16662	AT5G03940.1	14517205
AT2G45770.1	KXG27759	AT5G03940.1	14517205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0958100-01	Rice	plastid	91.8	92.56
TraesCS3A01G498300.1	Wheat	plastid	87.98	89.69
TraesCSU01G058200.1	Wheat	plastid	87.98	89.44
TraesCS3B01G561300.1	Wheat	plastid	86.61	88.8
Zm00001d042044_P001	Maize	plastid	97.81	83.45
HORVU3Hr1G110160.4	Barley	mitochondrion	87.16	79.95
CDY18901	Canola	plastid	72.68	73.68
CDX74765	Canola	plastid	73.77	73.37
KRH48224	Soybean	plastid	74.32	73.12
KRH65131	Soybean	plastid	74.32	73.12
Bra004937.1-P	Field mustard	plastid	73.5	73.1
AT2G45770.1	Thale cress	plastid	72.68	72.68
GSMUA_Achr11P...	Banana	plastid	75.41	72.25
VIT_15s0048g02080.t01	Wine grape	plastid	71.86	71.66
CDY37064	Canola	plastid	71.86	71.47
CDY27360	Canola	plastid	71.04	70.84
Bra039315.1-P	Field mustard	plastid	60.93	70.79
Solyc01g091580.2.1	Tomato	plastid	71.04	70.65
PGSC0003DMT400071384	Potato	plastid	70.77	70.38
KXG37972	Sorghum	cytosol	24.32	19.96
KXG37974	Sorghum	cytosol	24.04	19.73
KXG34125	Sorghum	cytosol	24.59	18.11
EES01544	Sorghum	cytosol	24.04	17.74
EES19782	Sorghum	cytosol	22.68	17.22
KXG27759	Sorghum	plastid	24.86	16.52
EES16662	Sorghum	plastid	25.14	16.46
EES17686	Sorghum	endoplasmic reticulum, extracellular	25.14	15.65
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	26.5	15.54

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.1.7.4	Gene3D:3.40.50.300	EntrezGene:8074093	InterPro:AAA+_ATPase	UniProt:C5XIJ9
EnsemblPlants:EES04254	ProteinID:EES04254	ProteinID:EES04254.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006614	GO:GO:0006810
GO:GO:0008150	HAMAP:MF_00920	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF2	SMART:SM00382	SMART:SM00962	SMART:SM00963	EnsemblPlantsGene:SORBI_3003G432500
InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom	InterPro:SR_rcpt_FtsY	SUPFAM:SSF47364	SUPFAM:SSF52540	unigene:Sbi.2690
InterPro:Signal_recog_particl_SRP54_hlx	TIGRFAMs:TIGR00064	UniParc:UPI0001A857AF	RefSeq:XP_002459134.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:73479503..73482302

Molecular Weight (calculated)

39281.6 Da

IEP (calculated)

8.120

GRAVY (calculated)

-0.009

Length

366 amino acids

Sequence
(BLAST)

001: MAAPSHVLPF LSPAGGCAAS SARARSHSHS GRRAGILRCS AAAGQAGFFT RLGRLIKEKA KSDVEKLFSG FSKTRENLSV VDELLTYWNL ADTDRVLDDL
101: EEALLVSDFG PKISFRIVDT LREEIRDGKL KSGAEIKAAL KRCILELLTS KGGNSELNLG FRKPAVIMIV GVNGGGKTTS LGKLAYRFKN EGVKVLMAAG
201: DTFRAAARDQ LEVWAERTGS EIVIDNDKKA QPPAVLSQAV KRGKREGFDV VLCDTSGRLH TNYGLMEELV SCKKVLVKAL PGAPNEILLV LDGTTGLNML
301: QQAREFNDVV GVTGFILTKL DGTARGGCVV SVVDELGIPV KFIGVGEGME DLQPFDAEAF VEAIFP

Best Arabidopsis Sequence Match ( AT2G45770.1 )
(BLAST)

001: MATSSAHLSF LAGRISPFSS ERIGLFPLRG EFRPRMTRFR CSAGPSGFFT RLGRLIKEKA KSDVEKVFSG FSKTRENLAV IDELLLFWNL AETDRVLDEL
101: EEALLVSDFG PKITVRIVER LREDIMSGKL KSGSEIKDAL KESVLEMLAK KNSKTELQLG FRKPAVIMIV GVNGGGKTTS LGKLAHRLKN EGTKVLMAAG
201: DTFRAAASDQ LEIWAERTGC EIVVAEGDKA KAATVLSKAV KRGKEEGYDV VLCDTSGRLH TNYSLMEELI ACKKAVGKIV SGAPNEILLV LDGNTGLNML
301: PQAREFNEVV GITGLILTKL DGSARGGCVV SVVEELGIPV KFIGVGEAVE DLQPFDPEAF VNAIFS

Arabidopsis Description

CPFTSYCell division protein FtsY homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80842]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.