CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37974	Sorghum	cytosol	62.58	69.73
KXG37972	Sorghum	cytosol	61.57	68.61
EES19782	Sorghum	cytosol	60.36	62.24
EES01544	Sorghum	cytosol	59.76	59.88
Os05t0509500-01	Rice	plasma membrane	57.95	59.63
TraesCS1A01G327200.1	Wheat	cytosol	59.56	59.56
TraesCS1B01G340600.1	Wheat	golgi, plastid	59.36	59.36
HORVU2Hr1G020570.1	Barley	plasma membrane	59.15	59.15
TraesCS1D01G329300.1	Wheat	cytosol	58.75	58.75
HORVU1Hr1G077990.4	Barley	cytosol	58.75	57.94
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	57.34	57.58
KRH44479	Soybean	cytosol	57.34	57.58
TraesCS1A01G327300.1	Wheat	cytosol	56.94	57.4
Solyc12g042740.1.1	Tomato	cytosol	56.94	56.71
KRH09713	Soybean	cytosol	56.94	56.71
TraesCS1B01G340700.1	Wheat	cytosol	56.34	56.68
VIT_09s0002g07290.t01	Wine grape	cytosol	56.34	56.57
CDY16472	Canola	cytosol	44.47	56.38
PGSC0003DMT400073698	Potato	cytosol	56.54	56.31
KRH23593	Soybean	cytosol	56.54	56.2
CDY36546	Canola	cytosol	53.52	55.53
PGSC0003DMT400001674	Potato	cytosol	55.33	55.33
Bra014161.1-P	Field mustard	cytosol	55.13	55.24
CDX77276	Canola	cytosol	55.13	55.24
CDY39632	Canola	cytosol	53.32	55.21
AT1G15310.1	Thale cress	cytosol	52.92	54.91
Bra026145.1-P	Field mustard	cytosol	52.92	54.91
Bra018760.1-P	Field mustard	cytosol	54.53	54.75
CDX93702	Canola	cytosol	54.53	54.75
CDY40616	Canola	cytosol	54.53	54.75
AT1G48900.1	Thale cress	cytosol	54.53	54.75
CDY10656	Canola	cytosol	21.33	54.08
AT5G49500.1	Thale cress	cytosol	50.91	50.91
Solyc03g116810.2.1	Tomato	nucleus	56.14	47.29
GSMUA_Achr9P25680_001	Banana	cytosol	36.42	41.51
CDY17067	Canola	cytosol, nucleus	24.95	38.39
CDY46694	Canola	cytosol	23.94	38.39
AT5G66970.1	Thale cress	cytosol	13.28	37.71
Bra014039.1-P	Field mustard	cytosol	29.58	35.77
EES04254	Sorghum	plastid	18.11	24.59
EES16662	Sorghum	plastid	26.16	23.26
KXG27759	Sorghum	plastid	25.35	22.87
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	17.71	14.1
EES17686	Sorghum	endoplasmic reticulum, extracellular	16.5	13.95

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	UniProt:A0A1B6Q880	InterPro:AAA+_ATPase
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500
InterPro:IPR036891	EnsemblPlants:KXG34125	ProteinID:KXG34125	ProteinID:KXG34125.1	ProteinID:OQU88203.1	InterPro:P-loop_NTPase
PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5
SMART:SM00382	SMART:SM00962	SMART:SM00963	EnsemblPlantsGene:SORBI_3003G427400	InterPro:SRP/SRP_N	InterPro:SRP54
InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx
InterPro:Signal_recog_particle_SRP54_M	UniParc:UPI00081ABB6D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:73083454..73085546

Molecular Weight (calculated)

53629.0 Da

IEP (calculated)

9.143

GRAVY (calculated)

-0.117

Length

497 amino acids

Sequence
(BLAST)

001: MVLAQLGESL VGALAQMAKS TVVDDKVVVD CLNDVSRALL QADVRFETVR AVQASIGSAV VNLQSLAAGT DRRRAIKHAV VDELRRMLDP AAGGGTGKPP
101: PFFVPRKGRK PASVVMFVGL QGSGKTTTCV KYADYHRRTG FSPALVCADT FRAGALDQLR QNAAKAGIPF YGSYTESDPV RVAVEGVDRF RNADQAAAAE
201: GCDLIVVDTS GRHSQEAALL EEMRQLAEAT RPDLVVLVMD ATIGQAAFDQ ALAFKQSVEV GAVIVVTKMD GHAKGGGGAL SAVAATKSPV IFIGTGEHIA
301: DLEAFDARSF VSRRLLGMGD LPGFMDKIED AMTTMTMAAD QGQEGLEQQL LHELTTVKGA SFTFTLRALY SLFRLVQRMG PLGHLVSFLP AGLLGDKGKQ
401: EEEGQQDKIK RYMTIMDSMS AAELDGADPM KLMMTKQQQS RINRVARGSG RPVSQVVELL QEHKRMAEML SELAPAHVKR KRPNNKHIKR RLFNTSC

Best Arabidopsis Sequence Match ( AT1G15310.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMNNV TIIDEKVLND FLNEITRALL QSDVSFGLVE KMQTNIKKIV NLDDLAAGHN KRLIIEQAIF KELCRMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK

Arabidopsis Description

SRP-54ASignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:Q56XJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.