Factsheet for Solyc12g042740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073698	Potato	cytosol	98.8	98.8
KRH44479	Soybean	cytosol	93.99	94.75
KRH09713	Soybean	cytosol	94.39	94.39
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	93.59	94.34
KRH23593	Soybean	cytosol	94.19	94.0
VIT_09s0002g07290.t01	Wine grape	cytosol	92.38	93.13
GSMUA_Achr8P03120_001	Banana	cytosol	91.78	92.15
Os01t0772800-01	Rice	plasma membrane	89.58	90.12
EES01544	Sorghum	cytosol	89.58	90.12
Zm00001d012652_P003	Maize	extracellular	89.58	89.4
CDY16472	Canola	cytosol	69.74	88.78
AT1G48900.1	Thale cress	cytosol	87.78	88.48
Zm00001d043303_P001	Maize	cytosol	87.37	88.26
CDY40616	Canola	cytosol	85.97	86.67
Bra018760.1-P	Field mustard	cytosol	85.97	86.67
CDX93702	Canola	cytosol	85.97	86.67
Bra014161.1-P	Field mustard	cytosol	85.77	86.29
CDX77276	Canola	cytosol	85.57	86.09
TraesCS1B01G340600.1	Wheat	golgi, plastid	83.17	83.5
TraesCS1A01G327200.1	Wheat	cytosol	83.17	83.5
HORVU2Hr1G020570.1	Barley	plasma membrane	82.97	83.3
TraesCS1D01G329300.1	Wheat	cytosol	82.16	82.5
HORVU1Hr1G077990.4	Barley	cytosol	82.36	81.55
AT1G15310.1	Thale cress	cytosol	78.16	81.42
HORVU3Hr1G075590.1	Barley	cytosol	30.66	79.69
Bra026145.1-P	Field mustard	cytosol	75.95	79.12
CDY36546	Canola	cytosol	75.55	78.71
CDY39632	Canola	cytosol	75.55	78.54
HORVU6Hr1G029680.1	Barley	cytosol	29.86	77.6
HORVU5Hr1G019120.2	Barley	cytosol	29.86	77.6
AT5G49500.1	Thale cress	cytosol	77.15	77.46
Solyc03g116810.2.1	Tomato	nucleus	91.58	77.46
HORVU2Hr1G125480.2	Barley	cytosol	30.06	76.14
HORVU7Hr1G036330.1	Barley	cytosol	36.67	75.93
Os05t0509500-01	Rice	plasma membrane	72.95	75.36
TraesCS1A01G327300.1	Wheat	cytosol	73.95	74.85
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	72.55	74.79
TraesCS1B01G340700.1	Wheat	cytosol	73.75	74.49
TraesCS3A01G322800.1	Wheat	mitochondrion	71.94	74.17
CDY10656	Canola	cytosol	29.06	73.98
EES19782	Sorghum	cytosol	71.34	73.86
TraesCS3B01G342900.1	Wheat	cytosol	71.54	73.76
HORVU2Hr1G097520.1	Barley	cytosol	32.46	72.97
Zm00001d038661_P001	Maize	cytosol	68.74	71.16
KXG37974	Sorghum	cytosol	58.92	65.92
KXG37972	Sorghum	cytosol	58.52	65.47
KXG34125	Sorghum	cytosol	56.71	56.94
CDY17067	Canola	cytosol, nucleus	28.66	44.27
CDY46694	Canola	cytosol	27.45	44.19
AT5G66970.1	Thale cress	cytosol	15.23	43.43
Bra014039.1-P	Field mustard	cytosol	34.67	42.09
Solyc09g009940.2.1	Tomato	plastid	26.45	23.28
Solyc01g091580.2.1	Tomato	plastid	15.83	21.47
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	17.23	13.89

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0030529
GO:GO:0048500	InterPro:IPR036891	HAMAP:MF_00306	InterPro:P-loop_NTPase	UniProt:P49972	PFAM:PF00448
PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382
SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk
SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M
EnsemblPlantsGene:Solyc12g042740.1	EnsemblPlants:Solyc12g042740.1.1	TIGRFAMs:TIGR01425	UniParc:UPI0000135ED2	EMBL:Z34527	SEG:seg

Description

Signal recognition particle 54 kDa protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P49972]

Coordinates

chr12:+:39706333..39712007

Molecular Weight (calculated)

55187.7 Da

IEP (calculated)

9.574

GRAVY (calculated)

-0.264

Length

499 amino acids

Sequence
(BLAST)

001: MVLAELGGSI SRALQQMSNA TIIDEKVLNE CLNEITRALL QADVQFKLVR DMTTNIKKIV NLDDLAAGHN KRRIIQQAVF NELCKILDPG KPSFTPKKGK
101: PSIVMFVGLQ GSGKTTTCTK YAYYHQKKGW KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVDGVETFK KENCDLIIVD TSGRHKQEAA
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIVTKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFMDKIHEV VPMDQQPELL QKLSEGHFTL RIMYEQFQNI LKMGPIGQVF SMLPGFSAEL MPKGRENESQ AKIKRYMTMM DSMTNEELDS SNPKLMTDSR
401: IMRIARGSGR QVHEVMDMME EYKRLAKIWS KMKGLKIPKK GEMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQNLMKQM GSAKDMMGGM GGMFGGGDK

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.