Factsheet for Zm00001d038661_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19782	Sorghum	cytosol	88.38	88.38
Os05t0509500-01	Rice	plasma membrane	72.61	72.46
Zm00001d043303_P001	Maize	cytosol	74.07	72.27
TraesCS1B01G340600.1	Wheat	golgi, plastid	73.24	71.03
HORVU2Hr1G020570.1	Barley	plasma membrane	73.24	71.03
TraesCS1A01G327200.1	Wheat	cytosol	73.24	71.03
TraesCS1D01G329300.1	Wheat	cytosol	73.03	70.83
Zm00001d012652_P003	Maize	extracellular	73.44	70.8
HORVU1Hr1G077990.4	Barley	cytosol	72.61	69.44
KRH09713	Soybean	cytosol	71.58	69.14
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	70.95	69.09
KRH44479	Soybean	cytosol	70.75	68.89
Solyc12g042740.1.1	Tomato	cytosol	71.16	68.74
KRH23593	Soybean	cytosol	70.95	68.4
PGSC0003DMT400001674	Potato	cytosol	70.33	68.21
VIT_09s0002g07290.t01	Wine grape	cytosol	69.92	68.08
PGSC0003DMT400073698	Potato	cytosol	70.33	67.94
TraesCS1A01G327300.1	Wheat	cytosol	69.29	67.75
TraesCS1B01G340700.1	Wheat	cytosol	68.46	66.8
AT1G15310.1	Thale cress	cytosol	65.77	66.18
CDY16472	Canola	cytosol	53.73	66.07
AT1G48900.1	Thale cress	cytosol	67.63	65.86
CDY36546	Canola	cytosol	65.35	65.76
CDX77276	Canola	cytosol	67.63	65.73
Bra014161.1-P	Field mustard	cytosol	67.63	65.73
CDY40616	Canola	cytosol	67.43	65.66
CDX93702	Canola	cytosol	67.43	65.66
Bra018760.1-P	Field mustard	cytosol	67.43	65.66
CDY10656	Canola	cytosol	26.56	65.31
Bra026145.1-P	Field mustard	cytosol	64.52	64.93
CDY39632	Canola	cytosol	64.52	64.79
AT5G49500.1	Thale cress	cytosol	62.45	60.56
Solyc03g116810.2.1	Tomato	nucleus	70.75	57.8
GSMUA_Achr9P25680_001	Banana	cytosol	44.61	49.31
AT5G66970.1	Thale cress	cytosol	15.15	41.71
CDY46694	Canola	cytosol	25.93	40.32
CDY17067	Canola	cytosol, nucleus	26.76	39.94
Bra014039.1-P	Field mustard	cytosol	32.16	37.71
Zm00001d023431_P002	Maize	plastid	27.18	23.23
Zm00001d052556_P001	Maize	plastid	24.69	21.83
Zm00001d042044_P001	Maize	plastid	16.39	18.41
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	17.43	13.31

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	EntrezGene:103630576	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	UniProt:A0A1D6M7Y7
InterPro:AAA+_ATPase	ProteinID:AQK87137.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0016787	GO:GO:0030529	GO:GO:0045047	GO:GO:0048500	InterPro:IPR036891
HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300
PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540
InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI00084591B6	EnsemblPlantsGene:Zm00001d038661
EnsemblPlants:Zm00001d038661_P001	EnsemblPlants:Zm00001d038661_T001	SEG:seg	:	:	:

Description

Signal recognition particle 54 kDa protein 3

Coordinates

chr6:-:161973344..161977653

Molecular Weight (calculated)

53300.8 Da

IEP (calculated)

9.699

GRAVY (calculated)

-0.264

Length

482 amino acids

Sequence
(BLAST)

001: MVLAELGGSI ARALARMSNA TVVDEKVLAD CLNEICRALL QADVRFDTVR DVKANINRIV NLDALAAGTN KRRIIQQAVV DELRRMLDPG KPSFTPSKGK
101: PNVVMFVGLQ GSGKTTTCTK YADYHRRKGF NPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDMFM KEKYDLIIVD TSGRHKQEAA
201: LFEEMRQVSE ATKPDLVIFV MDGSIGQAAF DQAQAFKQSA SVGAVIVTKM DGHAKGGGAL SAVAATKSPV IFIGTGEHIP DFEFTTVYLT SVYLSGMGDL
301: SGLVNKIQEF MPDNQQMQIM DKLGEGTFTL RLLYEMFQNL QRIGPLGQLV SMIPGFSGQF IEKGNEKEGQ AKIKRYMTMM DSMTDAELDG TDPKLMNQSR
401: INRIARGSGR RVEEVVHMLD EYKRIAKVWK KLPVLNNNRR SDMNRDIRRI SDAIPPNMLT QLGGIAGLQN MIKQMGGRDR SR

Best Arabidopsis Sequence Match ( AT1G15310.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMNNV TIIDEKVLND FLNEITRALL QSDVSFGLVE KMQTNIKKIV NLDDLAAGHN KRLIIEQAIF KELCRMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK

Arabidopsis Description

SRP-54ASignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:Q56XJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.