Factsheet for Bra018760.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93702	Canola	cytosol	99.8	99.8
Bra014161.1-P	Field mustard	cytosol	97.37	97.18
AT1G48900.1	Thale cress	cytosol	95.15	95.15
KRH44479	Soybean	cytosol	87.07	87.07
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	86.87	86.87
KRH09713	Soybean	cytosol	86.67	85.97
Solyc12g042740.1.1	Tomato	cytosol	86.67	85.97
KRH23593	Soybean	cytosol	86.67	85.8
VIT_09s0002g07290.t01	Wine grape	cytosol	85.66	85.66
GSMUA_Achr8P03120_001	Banana	cytosol	85.66	85.31
PGSC0003DMT400001674	Potato	cytosol	85.45	85.11
PGSC0003DMT400073698	Potato	cytosol	85.45	84.77
Os01t0772800-01	Rice	plasma membrane	83.64	83.47
EES01544	Sorghum	cytosol	83.43	83.27
Zm00001d012652_P003	Maize	extracellular	83.43	82.6
Bra026145.1-P	Field mustard	cytosol	79.6	82.25
Zm00001d043303_P001	Maize	cytosol	81.62	81.78
HORVU5Hr1G019120.2	Barley	cytosol	30.51	78.65
HORVU6Hr1G029680.1	Barley	cytosol	30.51	78.65
HORVU2Hr1G020570.1	Barley	plasma membrane	78.59	78.27
TraesCS1B01G340600.1	Wheat	golgi, plastid	78.59	78.27
TraesCS1D01G329300.1	Wheat	cytosol	78.38	78.07
HORVU2Hr1G125480.2	Barley	cytosol	30.71	77.16
HORVU1Hr1G077990.4	Barley	cytosol	77.98	76.59
HORVU3Hr1G075590.1	Barley	cytosol	29.49	76.04
HORVU7Hr1G036330.1	Barley	cytosol	35.76	73.44
Solyc03g116810.2.1	Tomato	nucleus	85.45	71.69
Os05t0509500-01	Rice	plasma membrane	69.49	71.22
HORVU2Hr1G097520.1	Barley	cytosol	31.52	70.27
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	68.69	70.25
TraesCS1B01G340700.1	Wheat	cytosol	69.9	70.04
EES19782	Sorghum	cytosol	67.88	69.71
TraesCS3B01G342900.1	Wheat	cytosol	68.08	69.63
Zm00001d038661_P001	Maize	cytosol	65.66	67.43
KXG37974	Sorghum	cytosol	58.18	64.57
KXG37972	Sorghum	cytosol	57.78	64.13
GSMUA_Achr9P25680_001	Banana	cytosol	50.3	57.11
KXG34125	Sorghum	cytosol	54.75	54.53
Bra014039.1-P	Field mustard	cytosol	33.54	40.39
Bra009499.1-P	Field mustard	plastid	27.07	23.67
Bra028809.1-P	Field mustard	plastid	26.46	23.23
Bra039315.1-P	Field mustard	plastid	14.55	22.86
Bra004937.1-P	Field mustard	plastid	16.77	22.55
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	17.58	14.17
Bra011203.1-P	Field mustard	endoplasmic reticulum	17.58	13.99
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	11.11	10.44

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EnsemblPlantsGene:Bra018760
EnsemblPlants:Bra018760.1	EnsemblPlants:Bra018760.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0016787	GO:GO:0030529	GO:GO:0045047	GO:GO:0048500	InterPro:IPR036891
UniProt:M4DQG7	HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978
ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962	SMART:SM00963
InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446
SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI000253EC5A
SEG:seg	:	:	:	:	:

Description

AT1G48900 (E=1e-246) | signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)

Coordinates

chrA06:+:2147108..2149566

Molecular Weight (calculated)

54733.2 Da

IEP (calculated)

9.633

GRAVY (calculated)

-0.262

Length

495 amino acids

Sequence
(BLAST)

001: MVLAELGGQI ASALQKMSNV TIIDEKALNE CLKEITRALL HSDVSFPLVR EMQNNIKKIV NLEELAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKARIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAT
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQDV VPKNQQPELL EKLSQGTFTL RIMYDQFQNI LNMGPLKEVF SMLPGGAADM MPKGHEKESQ AKVKRYMTMM DSMTNEELDS SNPKVFNESR
401: MMRIARGSGR LVREVMEMLE EYKRLAKIWS KMKGLKIPKS GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGKDK

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.