Factsheet for Bra011203.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
endoplasmic reticulum 3
mitochondrion 3
cytosol 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28196	Canola	endoplasmic reticulum	100.0	100.0
CDX68673	Canola	extracellular	97.59	96.66
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	86.98	88.11
AT4G30600.1	Thale cress	endoplasmic reticulum	89.39	87.7
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	72.35	85.39
GSMUA_Achr5P20650_001	Banana	cytosol	46.14	85.16
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	77.17	77.92
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	75.4	75.77
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	75.24	75.61
KRH54944	Soybean	endoplasmic reticulum	75.56	75.44
GSMUA_Achr11P...	Banana	endoplasmic reticulum	68.01	75.13
KRH03040	Soybean	endoplasmic reticulum	71.7	71.25
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	54.34	71.01
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	69.61	69.39
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	69.77	68.78
TraesCS5A01G534900.1	Wheat	golgi	69.94	67.76
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	70.1	67.6
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	69.94	67.34
KRH72313	Soybean	cytosol	33.28	67.21
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	60.61	62.21
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	60.93	61.93
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	60.13	61.51
EES17686	Sorghum	endoplasmic reticulum, extracellular	57.88	61.22
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	60.45	59.4
Bra039315.1-P	Field mustard	plastid	13.34	26.35
Bra004937.1-P	Field mustard	plastid	15.43	26.09
Bra018760.1-P	Field mustard	cytosol	13.99	17.58
Bra014161.1-P	Field mustard	cytosol	13.83	17.34
Bra026145.1-P	Field mustard	cytosol	13.02	16.91
Bra009499.1-P	Field mustard	plastid	15.27	16.78
Bra028809.1-P	Field mustard	plastid	14.63	16.13
Bra014039.1-P	Field mustard	cytosol	10.29	15.57

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EnsemblPlantsGene:Bra011203
EnsemblPlants:Bra011203.1	EnsemblPlants:Bra011203.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005047	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005785	GO:GO:0006614	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0016787	InterPro:Longin-like_dom_sf	UniProt:M4D3Z9
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF04086	ScanProsite:PS00300	PANTHER:PTHR43134
PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom
SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N	InterPro:Signal_recog_particl_SRP54_hlx	UniParc:UPI0002546D95
SEG:seg	:	:	:	:	:

Description

AT4G30600 (E=1e-195) | signal recognition particle receptor alpha subunit family protein

Coordinates

chrA01:+:3348724..3351134

Molecular Weight (calculated)

68605.9 Da

IEP (calculated)

6.957

GRAVY (calculated)

-0.455

Length

622 amino acids

Sequence
(BLAST)

001: MLEQLLIFTR GGLILWTCKE LGKALKSSPI DTLIRSCLLE ERSGEVSFNY EAYTLKWTFH NDLGLVFVAV YQRILHLLYV DDLLSMVKES FSEIYDPKRM
101: SYGDFDETFR QLRMEAEARG EELRKVKVVS SVKKQGQVSK SGLDGGIKSG GGGSKKDDGD GDKDKVGSLM TNGNHKDDDK TDLANGKENT ADNVVLDPSK
201: LMKLRSKGVR GRGGVRKTDS IGNKSSKVSA AEPPKKATKK NRVWDDAAPK QVKLDFTDSV GENGNGNHDH VDIAAADQGE SMMDKEEVFS SDDESEDDDD
301: DEPRSDEKKP EAKKKGWFSS VFQSITGKAN LERTDLEPAL KALKERLMTK NVAEEIAEKL CESVEASLEG KKLASFTRIS STVQGAMEDA LIRILTPRRS
401: IDIMRDVHAA KEQRRPYVVV FVGVNGVGKS TNLAKVAYWL QQHKVSVMMA ACDTFRSGAV EQLRTHARRL QIPIFEKGYE KDPAVVAKEA IQEATRNGSD
501: VVLVDTAGRM QDNEPLMRAL SKLINLNKPD LVLFVGEALV GNDAVDQLSK FNQKLSDLSN SGTTRLIDGI LLTKFDTIDD KVGAALSMVY ISGAPVMFVG
601: CGQSYTDLKK LNVKAIVKTL LK

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.