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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • mitochondrion 3
  • endoplasmic reticulum 3
  • cytosol 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:cytosol, mitochondrion
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68673 Canola extracellular 88.64 89.49
CDY28196 Canola endoplasmic reticulum 87.7 89.39
Bra011203.1-P Field mustard endoplasmic reticulum 87.7 89.39
Bra024060.1-P Field mustard cytosol, endoplasmic reticulum 85.49 88.27
CDX72255 Canola cytosol, endoplasmic reticulum 85.33 87.82
CDY39221 Canola cytosol, endoplasmic reticulum 84.86 87.48
Bra014811.1-P Field mustard cytosol, endoplasmic reticulum 71.29 85.77
GSMUA_Achr5P20650_001 Banana cytosol 45.58 85.76
VIT_11s0037g00300.t01 Wine grape endoplasmic reticulum 79.18 81.49
PGSC0003DMT400020462 Potato endoplasmic reticulum, extracellular 78.23 80.13
Solyc12g009990.1.1 Tomato endoplasmic reticulum, extracellular 78.08 79.97
KRH54944 Soybean endoplasmic reticulum 77.76 79.13
GSMUA_Achr11P... Banana endoplasmic reticulum 68.77 77.44
KRH03040 Soybean endoplasmic reticulum 73.5 74.44
GSMUA_Achr11P... Banana cytosol, mitochondrion 54.42 72.48
EER93028 Sorghum cytosol, endoplasmic reticulum, mitochondrion, plastid 69.72 70.83
Zm00001d027293_P004 Maize cytosol, endoplasmic reticulum, mitochondrion, plastid 69.4 69.73
KRH72313 Soybean cytosol 33.75 69.48
TraesCS5A01G534900.1 Wheat golgi 70.03 69.16
TraesCS4B01G367200.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plastid 70.19 68.99
TraesCS4D01G360300.1 Wheat cytosol, golgi, mitochondrion, plastid 70.03 68.73
TraesCS6D01G089600.1 Wheat endoplasmic reticulum 60.73 63.53
TraesCS6A01G101200.1 Wheat endoplasmic reticulum 60.88 63.07
EES17686 Sorghum endoplasmic reticulum, extracellular 58.2 62.76
TraesCS6B01G129300.1 Wheat endoplasmic reticulum 60.09 62.66
HORVU6Hr1G018280.1 Barley cytosol, endoplasmic reticulum 60.25 60.35
AT2G45770.1 Thale cress plastid 15.14 26.23
AT5G66970.1 Thale cress cytosol 5.05 18.29
AT1G15310.1 Thale cress cytosol 13.56 17.95
AT1G48900.1 Thale cress cytosol 13.25 16.97
AT5G03940.1 Thale cress plastid 14.98 16.84
AT5G49500.1 Thale cress cytosol 11.99 15.29
Protein Annotations
Gene3D:1.20.120.140MapMan:23.3.1.2.1Gene3D:3.30.450.60Gene3D:3.40.50.300EntrezGene:829183UniProt:A0A178UUJ7
InterPro:AAA+_ATPaseProteinID:AEE85785.1ProteinID:ANM67533.1ArrayExpress:AT4G30600EnsemblPlantsGene:AT4G30600RefSeq:AT4G30600
TAIR:AT4G30600RefSeq:AT4G30600-TAIR-GEnsemblPlants:AT4G30600.1TAIR:AT4G30600.1EMBL:AY065066EMBL:AY133612
Unigene:At.4581ProteinID:CAB79778.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924
GO:GO:0005047GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005785GO:GO:0006614GO:GO:0006810GO:GO:0006886
GO:GO:0008150GO:GO:0016020GO:GO:0016192GO:GO:0016787InterPro:Longin-like_dom_sfRefSeq:NP_001329356.1
RefSeq:NP_194789.1ProteinID:OAO96522.1InterPro:P-loop_NTPasePFAM:PF00448PFAM:PF02881PFAM:PF04086
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016
PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0005052PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281ScanProsite:PS00300
PANTHER:PTHR43134PANTHER:PTHR43134:SF4UniProt:Q9M0A0SMART:SM00382SMART:SM00962SMART:SM00963
InterPro:SRP/SRP_NInterPro:SRP54_GTPase_domSUPFAM:SSF47364SUPFAM:SSF52540SUPFAM:SSF64356InterPro:Sig_recog_particle_rcpt_asu_N
InterPro:Signal_recog_particl_SRP54_hlxUniParc:UPI000009E6FASEG:seg:::
Description
AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
Coordinates
chr4:-:14937840..14941208
Molecular Weight (calculated)
69576.8 Da
IEP (calculated)
7.561
GRAVY (calculated)
-0.454
Length
634 amino acids
Sequence
(BLAST)
001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.