Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G48900.1 | Thale cress | cytosol | 88.52 | 85.66 |
| CDY36546 | Canola | cytosol | 82.25 | 82.25 |
| CDY39632 | Canola | cytosol | 81.84 | 81.67 |
| Bra026145.1-P | Field mustard | cytosol | 81.21 | 81.21 |
| KRH47429 | Soybean | cytosol, endoplasmic reticulum, nucleus | 82.25 | 79.6 |
| KRH44479 | Soybean | cytosol | 82.25 | 79.6 |
| KRH09713 | Soybean | cytosol | 82.25 | 78.96 |
| KRH23593 | Soybean | cytosol | 82.25 | 78.8 |
| VIT_09s0002g07290.t01 | Wine grape | cytosol | 81.42 | 78.79 |
| PGSC0003DMT400001674 | Potato | cytosol | 81.21 | 78.27 |
| Solyc12g042740.1.1 | Tomato | cytosol | 81.42 | 78.16 |
| AT5G49500.1 | Thale cress | cytosol | 80.79 | 77.87 |
| GSMUA_Achr8P03120_001 | Banana | cytosol | 80.38 | 77.46 |
| PGSC0003DMT400073698 | Potato | cytosol | 80.38 | 77.15 |
| EES01544 | Sorghum | cytosol | 79.54 | 76.81 |
| Os01t0772800-01 | Rice | plasma membrane | 79.12 | 76.41 |
| Zm00001d043303_P001 | Maize | cytosol | 78.29 | 75.91 |
| Zm00001d012652_P003 | Maize | extracellular | 79.12 | 75.8 |
| HORVU5Hr1G019120.2 | Barley | cytosol | 30.06 | 75.0 |
| HORVU6Hr1G029680.1 | Barley | cytosol | 30.06 | 75.0 |
| HORVU2Hr1G125480.2 | Barley | cytosol | 30.48 | 74.11 |
| HORVU2Hr1G020570.1 | Barley | plasma membrane | 75.78 | 73.04 |
| TraesCS1B01G340600.1 | Wheat | golgi, plastid | 75.78 | 73.04 |
| TraesCS1D01G329300.1 | Wheat | cytosol | 75.37 | 72.64 |
| HORVU3Hr1G075590.1 | Barley | cytosol | 29.02 | 72.4 |
| HORVU1Hr1G077990.4 | Barley | cytosol | 75.37 | 71.63 |
| HORVU7Hr1G036330.1 | Barley | cytosol | 35.7 | 70.95 |
| HORVU2Hr1G097520.1 | Barley | cytosol | 31.94 | 68.92 |
| Os05t0509500-01 | Rice | plasma membrane | 69.31 | 68.74 |
| TraesCS1B01G340700.1 | Wheat | cytosol | 69.73 | 67.61 |
| EES19782 | Sorghum | cytosol | 67.64 | 67.22 |
| TraesCS3D01G308700.1 | Wheat | cytosol, mitochondrion | 67.64 | 66.94 |
| TraesCS3B01G342900.1 | Wheat | cytosol | 66.81 | 66.12 |
| Solyc03g116810.2.1 | Tomato | nucleus | 81.42 | 66.1 |
| Zm00001d038661_P001 | Maize | cytosol | 66.18 | 65.77 |
| KXG37974 | Sorghum | cytosol | 58.87 | 63.23 |
| KXG37972 | Sorghum | cytosol | 58.66 | 63.0 |
| GSMUA_Achr9P25680_001 | Banana | cytosol | 49.27 | 54.13 |
| KXG34125 | Sorghum | cytosol | 54.91 | 52.92 |
| AT5G66970.1 | Thale cress | cytosol | 15.45 | 42.29 |
| AT2G45770.1 | Thale cress | plastid | 17.75 | 23.22 |
| AT5G03940.1 | Thale cress | plastid | 25.05 | 21.28 |
| AT4G30600.1 | Thale cress | endoplasmic reticulum | 17.95 | 13.56 |
Protein Annotations
| Gene3D:1.10.260.30 | Gene3D:1.20.120.140 | MapMan:23.3.1.1.5 | Gene3D:3.40.50.300 | EntrezGene:838100 | InterPro:AAA+_ATPase |
| ProteinID:AAD39659.1 | ProteinID:AEE29301.1 | EMBL:AF344329 | EMBL:AK221684 | ArrayExpress:AT1G15310 | EnsemblPlantsGene:AT1G15310 |
| RefSeq:AT1G15310 | TAIR:AT1G15310 | RefSeq:AT1G15310-TAIR-G | EnsemblPlants:AT1G15310.1 | TAIR:AT1G15310.1 | Symbol:ATHSRP54A |
| EMBL:AY086187 | Unigene:At.24597 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005786 | GO:GO:0006614 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0008312 | GO:GO:0016787 | GO:GO:0030529 | GO:GO:0045047 | GO:GO:0048500 | InterPro:IPR036891 |
| EMBL:L19997 | HAMAP:MF_00306 | RefSeq:NP_563970.1 | InterPro:P-loop_NTPase | UniProt:P37106 | PFAM:PF00448 |
| PFAM:PF02881 | PFAM:PF02978 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00300 | PANTHER:PTHR11564 | PANTHER:PTHR11564:SF5 | UniProt:Q56XJ0 | SMART:SM00382 | SMART:SM00962 |
| SMART:SM00963 | InterPro:SRP/SRP_N | InterPro:SRP54 | InterPro:SRP54_GTPase_dom | InterPro:SRP54_euk | SUPFAM:SSF47364 |
| SUPFAM:SSF47446 | SUPFAM:SSF52540 | InterPro:Signal_recog_part_SRP54_M_sf | InterPro:Signal_recog_particl_SRP54_hlx | InterPro:Signal_recog_particle_SRP54_M | TIGRFAMs:TIGR01425 |
| UniParc:UPI000000140C | SEG:seg | : | : | : | : |
Description
SRP-54ASignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:Q56XJ0]
Coordinates
chr1:-:5268891..5272058
Molecular Weight (calculated)
53010.1 Da
IEP (calculated)
9.556
GRAVY (calculated)
-0.223
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLAELGGRI TRAIQQMNNV TIIDEKVLND FLNEITRALL QSDVSFGLVE KMQTNIKKIV NLDDLAAGHN KRLIIEQAIF KELCRMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.