Factsheet for Os11t0153600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0131900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	Os03t0131900-01	AT2G47450.1	11306572
AT5G03940.1	Os03t0131900-01	AT2G47450.1	14517205
AT5G03940.1	Os03t0131900-01	AT2G47450.1	15292240
AT5G03940.1	Os03t0131900-01	AT2G47450.1	15632183
AT5G03940.1	Os03t0131900-01	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G115500.1	Wheat	plastid	89.04	35.2
TraesCS4A01G197700.1	Wheat	plastid	89.04	35.2
TraesCS4B01G117800.1	Wheat	plastid	88.58	35.02
KXG27759	Sorghum	plastid	87.21	34.66
HORVU4Hr1G021960.1	Barley	plastid	88.58	34.58
Zm00001d052556_P001	Maize	plastid	85.84	34.5
Os11t0153700-01	Rice	plastid	74.43	29.26
VIT_08s0007g03160.t01	Wine grape	plastid	73.06	28.22
KRH67940	Soybean	plastid	72.6	28.14
PGSC0003DMT400022884	Potato	plastid	71.23	27.91
GSMUA_Achr10P...	Banana	plastid	72.6	27.65
Solyc09g009940.2.1	Tomato	plastid	71.23	27.51
CDY41424	Canola	plastid	70.78	27.43
Bra009499.1-P	Field mustard	plastid	69.86	27.03
CDX70273	Canola	plastid	69.86	27.03
AT5G03940.1	Thale cress	plastid	68.95	26.77
CDY14166	Canola	plastid	66.21	25.71
CDY04905	Canola	plastid	66.21	25.71
Bra028809.1-P	Field mustard	plastid	66.21	25.71
Os05t0509500-01	Rice	plasma membrane	22.37	10.14
Os01t0772800-01	Rice	plasma membrane	22.83	10.08
Os01t0958100-01	Rice	plastid	5.48	3.31
CDY14165	Canola	plastid	3.2	3.11
Os11t0153800-01	Rice	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:35.1	UniProt:A0A0P0XZ68	ProteinID:BAT12736.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500
InterPro:IPR036891	EnsemblPlantsGene:Os11g0153600	EnsemblPlants:Os11t0153600-01	PFAM:PF00448	PFAM:PF02978	ScanProsite:PS00300
PANTHER:PTHR11564	PANTHER:PTHR11564:SF19	InterPro:SRP54	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47446	InterPro:Signal_recog_part_SRP54_M_sf
InterPro:Signal_recog_particle_SRP54_M	UniParc:UPI0000DD9B2B	SEG:seg	:	:	:

Description

YGL138(t)Signal recognition particle 54 kDa (SRP54) protein, Chloroplast development (Os11t0153600-01)

Coordinates

chr11:+:2512383..2517219

Molecular Weight (calculated)

24783.2 Da

IEP (calculated)

10.064

GRAVY (calculated)

-0.600

Length

219 amino acids

Sequence
(BLAST)

001: MQVSGKPIKF VGRGERMEDL ELFYPDRMAQ RVLGMGDVLS FVEKAQEVMR QEDAVELQKK IMSAKFDFND FLKQSQNVAK MGSMSRVVGM IPGMNKVTPA
101: QIREAEKRLA FVESMINAMT AEEREKPELL AESRDRRIRV AEESGKSEQE VSQLVAQLFQ MRAQMQKLMG VMTGQEALPG MGNLMESLNA DEKAPPGTAR
201: RKRRHSKTRQ RELDAVPSS

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.