Factsheet for Os03t0131900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 17189339

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0151200-01
Os01t0772800-01
Os01t0958100-01
Os03t0131900-01
Os04t0471400-01
Os05t0509500-01
Os08t0254500-02
Os11t0153600-01
Os11t0153700-01
Os11t0153800-01
Os12t0182200-01
Os12t0209700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47450.1	Os01t0772800-01	AT1G15310.1	20828566
AT2G47450.1	Os05t0509500-01	AT1G15310.1	20828566
AT2G47450.1	Os12t0182200-01	AT1G34430.1	21798944
AT2G47450.1	Os08t0254500-02	AT2G18710.1	14517205
AT2G47450.1	Os01t0151200-01	AT2G28800.1	14517205
AT2G47450.1	Os01t0151200-01	AT2G28800.1	20828566
AT2G47450.1	Os01t0958100-01	AT2G45770.1	14517205
AT2G47450.1	Os01t0958100-01	AT2G45770.1	20828566
AT2G47450.1	Os03t0131900-01	AT2G47450.1	10480939
AT2G47450.1	Os03t0131900-01	AT2G47450.1	11306572
AT2G47450.1	Os12t0209700-01	AT4G10930.1	21798944
AT2G47450.1	Os11t0153600-01	AT5G03940.1	10480939
AT2G47450.1	Os11t0153700-01	AT5G03940.1	10480939
AT2G47450.1	Os11t0153800-01	AT5G03940.1	10480939
AT2G47450.1	Os11t0153600-01	AT5G03940.1	11306572
AT2G47450.1	Os11t0153700-01	AT5G03940.1	11306572
AT2G47450.1	Os11t0153800-01	AT5G03940.1	11306572
AT2G47450.1	Os11t0153600-01	AT5G03940.1	14517205
AT2G47450.1	Os11t0153700-01	AT5G03940.1	14517205
AT2G47450.1	Os11t0153800-01	AT5G03940.1	14517205
AT2G47450.1	Os11t0153600-01	AT5G03940.1	15292240
AT2G47450.1	Os11t0153700-01	AT5G03940.1	15292240
AT2G47450.1	Os11t0153800-01	AT5G03940.1	15292240
AT2G47450.1	Os11t0153600-01	AT5G03940.1	15632183
AT2G47450.1	Os11t0153700-01	AT5G03940.1	15632183
AT2G47450.1	Os11t0153800-01	AT5G03940.1	15632183
AT2G47450.1	Os11t0153600-01	AT5G03940.1	16678173
AT2G47450.1	Os11t0153700-01	AT5G03940.1	16678173
AT2G47450.1	Os11t0153800-01	AT5G03940.1	16678173
AT2G47450.1	Os04t0471400-01	AT5G56250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93303	Sorghum	mitochondrion, plastid	81.19	82.68
TraesCS5A01G498700.1	Wheat	mitochondrion	81.44	80.82
TraesCS4D01G323400.1	Wheat	plastid	81.44	80.61
Zm00001d027518_P001	Maize	plastid	79.12	80.37
TraesCS4B01G326700.1	Wheat	plastid	80.41	79.39
Solyc02g087400.1.1	Tomato	cytosol, mitochondrion	47.94	50.54
PGSC0003DMT400003274	Potato	plastid	47.42	49.46
VIT_03s0038g03560.t01	Wine grape	plastid	47.42	49.33
AT2G47450.1	Thale cress	plastid	46.91	48.79
KRH29099	Soybean	plastid	47.94	48.69
CDX77337	Canola	plastid	47.68	48.68
Bra014106.1-P	Field mustard	plastid	47.42	48.42
CDY70592	Canola	plastid	47.42	48.42
KRG92072	Soybean	cytosol	13.4	47.71

Protein Annotations

Gene3D:1.25.40.20	Gene3D:2.40.50.40	MapMan:23.1.7.3.1	EntrezGene:4331514	ProteinID:ABF93821.1	EMBL:AC098693
EMBL:AK099900	EMBL:AP014959	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:BAF10780.1
InterPro:CPSRP43	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain	ProteinID:EEE58279.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005786	GO:GO:0006810	GO:GO:0008150	GO:GO:0009416	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009644	GO:GO:0009941	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0019904	GO:GO:0030674	GO:GO:0032991	GO:GO:0042802
GO:GO:0045038	GO:GO:0070208	GO:GO:0080085	GO:GO:0097718	InterPro:IPR000953	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	EnsemblPlantsGene:Os03g0131900	EnsemblPlants:Os03t0131900-01	PFAM:PF00385	PFAM:PF13637
PFscan:PS50013	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF11	UniProt:Q8LSQ2
SMART:SM00248	SMART:SM00298	SUPFAM:SSF48403	SUPFAM:SSF54160	UniParc:UPI000009FECA	RefSeq:XP_015629751.1
SEG:seg	:	:	:	:	:

Description

Chloroplast Signal Recognition Particle 43, chloroplast signal recognition particle 43 KD proteinChloroplast signal recognition particle 43 KD protein, Chloroplast development and photosynthesis (Os03t0131900-01)

Coordinates

chr3:-:1817533..1818855

Molecular Weight (calculated)

42141.0 Da

IEP (calculated)

4.356

GRAVY (calculated)

-0.492

Length

388 amino acids

Sequence
(BLAST)

001: MEAVLRHPSL SRLKPPNPNA QRTPALSITV PFRLRLPNRR LTAAAVFQDQ TNPRNPASKG GDDDEAYGEV DRIVSSRTIK NPVFAEDGSA TTVTATEYLV
101: EWKDGHEPSW IPAEAIAADV VAEYETPWWT AAKKADAAEI TALLADETLR RDPDAEDAQG RTAMHFAAGL GSEECVRALA EAGADVGRPE RAGGGLTPLH
201: IAVGYGRPAA VRALLELGAE PEAPDGQGRT PLELVQDVLA KTPKGNPATF ERRLALEAAA KELEKAVYEW GEVEKVVDGR GEGKWREYLV EWRDGGDREW
301: VRAAWVAEDL VKDFDAGLEY AVAEAVVNKR EAAEGEGKWE YLVKWVDIEE ATWEPAENVD AELLQEFEQR QSGVAAGGDA PPPPPVAG

Best Arabidopsis Sequence Match ( AT2G47450.1 )
(BLAST)

001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE

Arabidopsis Description

CAOSignal recognition particle 43 kDa protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22265]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.