Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 4
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47450.1 | Solyc03g116810.2.1 | AT1G15310.1 | 20828566 |
| AT2G47450.1 | Solyc12g042740.1.1 | AT1G15310.1 | 20828566 |
| AT2G47450.1 | Solyc11g017250.1.1 | AT1G34430.1 | 21798944 |
| AT2G47450.1 | Solyc07g006520.2.1 | AT2G18710.1 | 14517205 |
| AT2G47450.1 | Solyc11g066110.1.1 | AT2G28800.1 | 14517205 |
| AT2G47450.1 | Solyc11g066110.1.1 | AT2G28800.1 | 20828566 |
| AT2G47450.1 | Solyc01g091580.2.1 | AT2G45770.1 | 14517205 |
| AT2G47450.1 | Solyc01g091580.2.1 | AT2G45770.1 | 20828566 |
| AT2G47450.1 | Solyc02g087400.1.1 | AT2G47450.1 | 10480939 |
| AT2G47450.1 | Solyc02g087400.1.1 | AT2G47450.1 | 11306572 |
| AT2G47450.1 | Solyc12g055910.1.1 | AT4G10930.1 | 21798944 |
| AT2G47450.1 | Solyc09g009940.2.1 | AT5G03940.1 | 10480939 |
| AT2G47450.1 | Solyc09g009940.2.1 | AT5G03940.1 | 11306572 |
| AT2G47450.1 | Solyc09g009940.2.1 | AT5G03940.1 | 14517205 |
| AT2G47450.1 | Solyc09g009940.2.1 | AT5G03940.1 | 15292240 |
| AT2G47450.1 | Solyc09g009940.2.1 | AT5G03940.1 | 15632183 |
| AT2G47450.1 | Solyc09g009940.2.1 | AT5G03940.1 | 16678173 |
| AT2G47450.1 | Solyc07g066200.2.1 | AT5G56250.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003274 | Potato | plastid | 93.75 | 92.74 |
| VIT_03s0038g03560.t01 | Wine grape | plastid | 66.85 | 65.95 |
| KRG92072 | Soybean | cytosol | 18.75 | 63.3 |
| KRH29099 | Soybean | plastid | 61.96 | 59.69 |
| AT2G47450.1 | Thale cress | plastid | 56.52 | 55.76 |
| Bra014106.1-P | Field mustard | plastid | 55.43 | 53.68 |
| CDX77337 | Canola | plastid | 55.43 | 53.68 |
| CDY70592 | Canola | plastid | 55.43 | 53.68 |
| Os03t0131900-01 | Rice | plastid | 50.54 | 47.94 |
| OQU93303 | Sorghum | mitochondrion, plastid | 49.46 | 47.77 |
| Zm00001d027518_P001 | Maize | plastid | 49.18 | 47.38 |
| TraesCS5A01G498700.1 | Wheat | mitochondrion | 49.73 | 46.8 |
| TraesCS4D01G323400.1 | Wheat | plastid | 49.18 | 46.17 |
| TraesCS4B01G326700.1 | Wheat | plastid | 49.18 | 46.06 |
Protein Annotations
| Gene3D:1.25.40.20 | Gene3D:2.40.50.40 | MapMan:23.1.7.3.1 | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf |
| InterPro:CPSRP43 | InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009416 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0045038 |
| GO:GO:0080085 | InterPro:IPR000953 | InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 | UniProt:K4BBP7 |
| PFAM:PF00385 | PFAM:PF13857 | PFscan:PS50013 | PFscan:PS50088 | PFscan:PS50297 | PANTHER:PTHR24128 |
| PANTHER:PTHR24128:SF11 | SMART:SM00248 | SMART:SM00298 | SUPFAM:SSF48403 | SUPFAM:SSF54160 | EnsemblPlantsGene:Solyc02g087400.1 |
| EnsemblPlants:Solyc02g087400.1.1 | UniParc:UPI0002767F3C | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2:+:49852304..49853410
Molecular Weight (calculated)
41504.5 Da
IEP (calculated)
4.189
GRAVY (calculated)
-0.488
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MDALFVNSSL SRLKLKFSSQ FPTFSPLPHH SYLPLKKLNL PLVFATLQNQ HQQQSAAEEV AQEEFEDYDA DETYGEVNKI IGSRAIEGGK GMEYLIEWKD
101: EHAPTWVPSN FIAQDVVAEY ETPWWNAAKK SDESALRELI EAEDDRDVDA VDDDGRTALL FVSGLGSEPC VKLLAEAGAD VNYRDRSGGL TALHMAAGYV
201: KPGVAKLLIE LGADPEVQDY RGQTPLSLAR MVLNQTPKGN PMQFARRLGL ENVIRVLEDA IFEYAQVEEI LEKRGKGENV EYLVKWKDGE DNEWVKAWLI
301: SEDLVRDFEA GLEYAEAECI LEKREGDNGK GEYLVKWTDI EEATWEPEEN VDPLLIEDFE KGQQKVVS
101: EHAPTWVPSN FIAQDVVAEY ETPWWNAAKK SDESALRELI EAEDDRDVDA VDDDGRTALL FVSGLGSEPC VKLLAEAGAD VNYRDRSGGL TALHMAAGYV
201: KPGVAKLLIE LGADPEVQDY RGQTPLSLAR MVLNQTPKGN PMQFARRLGL ENVIRVLEDA IFEYAQVEEI LEKRGKGENV EYLVKWKDGE DNEWVKAWLI
301: SEDLVRDFEA GLEYAEAECI LEKREGDNGK GEYLVKWTDI EEATWEPEEN VDPLLIEDFE KGQQKVVS
001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE
Arabidopsis Description
CAOSignal recognition particle 43 kDa protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22265]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.