Factsheet for TraesCS1A01G075500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 1
mitochondrion 1
extracellular 1
golgi 2
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G327200.1	Wheat	cytosol	41.9	33.8
TraesCS1A01G327300.1	Wheat	cytosol	41.4	33.67
TraesCS3A01G322800.1	Wheat	mitochondrion	38.9	32.23
AT5G66970.1	Thale cress	cytosol	12.22	28.0
CDY17067	Canola	cytosol, nucleus	21.2	26.32
CDY46694	Canola	cytosol	20.2	26.13
Bra014039.1-P	Field mustard	cytosol	26.68	26.03
TraesCS3A01G498300.1	Wheat	plastid	17.71	19.78
TraesCS4A01G197700.1	Wheat	plastid	23.69	17.15
TraesCS4A01G197600.1	Wheat	plastid	22.94	16.64
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	16.21	10.62
TraesCS5A01G534900.1	Wheat	golgi	15.71	9.81

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0016787	GO:GO:0048500
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00962
InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	InterPro:Signal_recog_particl_SRP54_hlx
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1A01G075500	EnsemblPlants:TraesCS1A01G075500.1	:	:	:

Description

No Description!

Coordinates

chr1A:-:58481572..58484867

Molecular Weight (calculated)

44582.3 Da

IEP (calculated)

8.298

GRAVY (calculated)

-0.016

Length

401 amino acids

Sequence
(BLAST)

001: MVHPQLRVHL SRALALMCNT LVDMRVLDEC LCQISEALVK ADFTTKMVSE LQVKVKKAMD PTVTGSNHSI HQILCKEICK LIDSGRKPSF VPKKGMPCIV
101: LVIGFQDSGK TTSCAKFAYH HKQKGYKPSL VCADTGSSSL DRLKQIAHEA KIPVYGSNLG SDPIQVAIQG VEKFKKENSD LIIIDTSGSY TSKDAFFAEI
201: HKIEKATNPH LIVLVVDAAD GQFAFDLAGP FIRNCSIGSA IISKMDRHPY GGGTLSALAA ANCPVIFYGT GKSIESFEIF DVKAFTSNLL DYKSRTFTID
301: IEDMHNMLDN LQVSEVERTN AVRQMEKACL NAYHAVLEKE RMLAQQVSSS ESEYNKICDI LGEKELKHSK IKVSYRFLRI RIIFVLLPFT VLFSFFSPSL
401: H

Best Arabidopsis Sequence Match ( AT1G15310.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMNNV TIIDEKVLND FLNEITRALL QSDVSFGLVE KMQTNIKKIV NLDDLAAGHN KRLIIEQAIF KELCRMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK

Arabidopsis Description

SRP-54ASignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:Q56XJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.