Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AGP50769 | Barley | plastid | 7.14 | 10.53 |
| ATCG00560.1 | Thale cress | vacuole | 7.14 | 10.53 |
| CAA33963 | Rice | endoplasmic reticulum, vacuole | 7.14 | 10.53 |
| Os03t0667201-00 | Rice | endoplasmic reticulum, vacuole | 7.14 | 10.53 |
| TraesCS1A01G148700.1 | Wheat | endoplasmic reticulum, vacuole | 7.14 | 10.53 |
| TraesCS1D01G181900.1 | Wheat | endoplasmic reticulum, vacuole | 7.14 | 10.53 |
| TraesCS1D01G295200.1 | Wheat | endoplasmic reticulum, vacuole | 7.14 | 10.53 |
| TraesCS2D01G270500.1 | Wheat | endoplasmic reticulum, vacuole | 7.14 | 10.53 |
| TraesCS2D01G540200.1 | Wheat | endoplasmic reticulum, vacuole | 7.14 | 10.53 |
| TraesCS3B01G186500.1 | Wheat | endoplasmic reticulum, vacuole | 7.14 | 10.53 |
| TraesCS3D01G052700.1 | Wheat | plastid | 7.14 | 10.53 |
| TraesCS5A01G437100.1 | Wheat | endoplasmic reticulum, vacuole | 7.14 | 10.53 |
| TraesCS5B01G380100.1 | Wheat | endoplasmic reticulum, vacuole | 7.14 | 10.53 |
| TraesCS5D01G220800.1 | Wheat | vacuole | 7.14 | 10.53 |
| TraesCSU01G259300.1 | Wheat | golgi, vacuole | 7.14 | 10.53 |
| TraesCS5D01G009800.1 | Wheat | endoplasmic reticulum, vacuole | 5.36 | 7.89 |
Protein Annotations
| EnsemblPlants:Solyc04g049240.1.1 | EnsemblPlantsGene:Solyc04g049240.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | TMHMM:TMhelix |
| UniParc:UPI000276662F | UniProt:K4BRQ2 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4:+:41054770..41055662
Molecular Weight (calculated)
6976.3 Da
IEP (calculated)
8.182
GRAVY (calculated)
-0.291
Length
56 amino acids
Sequence
(BLAST)
(BLAST)
1: MYMVQQEEGS GVNGRYYWKD SSLDNRYCNW YSCNRFNRYF LLWFIFRIGF IPVVIE
001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT VGSETSYEEE HPGKEKLSRP
301: VHEKTITKEE PGWPSFGQLL TDLCKLALEF ITSHLVPARF QTNPNLRPLK DRLIMPEDEQ EPPRVQRHTA PAPISESRHA HLPKADDSYP EHKTPKLRSS
401: SVMKDPTLSS SKHHRTSSKR QDYAQFYASG EVAQPKIHKE RSRRRHRDKT TETEPKPTPS DTVKPVEYSN SSKFDHYNMR SSKYGPETPF RF
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT VGSETSYEEE HPGKEKLSRP
301: VHEKTITKEE PGWPSFGQLL TDLCKLALEF ITSHLVPARF QTNPNLRPLK DRLIMPEDEQ EPPRVQRHTA PAPISESRHA HLPKADDSYP EHKTPKLRSS
401: SVMKDPTLSS SKHHRTSSKR QDYAQFYASG EVAQPKIHKE RSRRRHRDKT TETEPKPTPS DTVKPVEYSN SSKFDHYNMR SSKYGPETPF RF
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]
SUBAcon: [plastid,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.