Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 1
- extracellular 2
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AGP50769 | Barley | plastid | 100.0 | 100.0 |
| CAA33963 | Rice | endoplasmic reticulum, vacuole | 100.0 | 100.0 |
| TraesCS1D01G181900.1 | Wheat | endoplasmic reticulum, vacuole | 100.0 | 100.0 |
| TraesCS3B01G186500.1 | Wheat | endoplasmic reticulum, vacuole | 100.0 | 100.0 |
| TraesCS3D01G052700.1 | Wheat | plastid | 100.0 | 100.0 |
| TraesCS5B01G380100.1 | Wheat | endoplasmic reticulum, vacuole | 100.0 | 100.0 |
| ATCG00560.1 | Thale cress | vacuole | 97.37 | 97.37 |
| TraesCS1A01G148700.1 | Wheat | endoplasmic reticulum, vacuole | 97.37 | 97.37 |
| TraesCS2D01G270500.1 | Wheat | endoplasmic reticulum, vacuole | 97.37 | 97.37 |
| TraesCS2D01G540200.1 | Wheat | endoplasmic reticulum, vacuole | 97.37 | 97.37 |
| TraesCS5D01G009800.1 | Wheat | endoplasmic reticulum, vacuole | 97.37 | 97.37 |
| TraesCSU01G259300.1 | Wheat | golgi, vacuole | 97.37 | 97.37 |
| Solyc04g049240.1.1 | Tomato | cytosol, plasma membrane, plastid | 10.53 | 7.14 |
Protein Annotations
| MapMan:1.1.1.2.6 | EntrezGene:3131418 | ProteinID:ADD62845.1 | ProteinID:AJC99328.1 | ProteinID:AJC99417.1 | EMBL:AY522330 |
| ProteinID:BAD17344.1 | ProteinID:BAD32935.1 | ProteinID:BAD33058.1 | ProteinID:BAD81683.1 | ProteinID:BAD81973.1 | ProteinID:BAD82563.1 |
| ProteinID:BAS85651.1 | ProteinID:CAA33963.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009539 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 |
| HAMAP:MF_01317 | RefSeq:NP_039401.1 | EnsemblPlantsGene:Os03g0667201 | EnsemblPlants:Os03t0667201-00 | UniProt:P60137 | PFAM:PD005113 |
| PFAM:PF02419 | InterPro:PSII_PsbL | InterPro:PSII_PsbL_sf | PANTHER:PTHR33391 | PANTHER:PTHR33391:SF5 | UniProt:Q6Z1V4 |
| SUPFAM:SSF161017 | TMHMM:TMhelix | UniParc:UPI00000002A4 | : | : | : |
Description
psbLPhotosystem II reaction center protein L. (Os03t0667201-00)
Coordinates
chr3:+:26268250..26268366
Molecular Weight (calculated)
4497.4 Da
IEP (calculated)
4.258
GRAVY (calculated)
0.258
Length
38 amino acids
Sequence
(BLAST)
(BLAST)
1: MTQSNPNEQN VELNRTSLYW GLLLIFVLAV LFSNYFFN
1: MTQSNPNEQS VELNRTSLYW GLLLIFVLAV LFSNYFFN
Arabidopsis Description
PSBLPhotosystem II reaction center protein L [Source:UniProtKB/Swiss-Prot;Acc:P60129]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.