CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 3
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

plastid: 15682463
plastid: 19137553

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

msms PMID: 19137553 doi

M Plöscher, B Granvogl, M Zoryan, V Reisinger, LA Eichacker

Ludwig-Maximilians-Universität, Biozentrum der LMU Biologie, Planegg-Martinsried, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA33963	Rice	endoplasmic reticulum, vacuole	100.0	100.0
Os03t0667201-00	Rice	endoplasmic reticulum, vacuole	100.0	100.0
TraesCS1D01G181900.1	Wheat	endoplasmic reticulum, vacuole	100.0	100.0
TraesCS3B01G186500.1	Wheat	endoplasmic reticulum, vacuole	100.0	100.0
TraesCS3D01G052700.1	Wheat	plastid	100.0	100.0
TraesCS5B01G380100.1	Wheat	endoplasmic reticulum, vacuole	100.0	100.0
ATCG00560.1	Thale cress	vacuole	97.37	97.37
TraesCS1A01G148700.1	Wheat	endoplasmic reticulum, vacuole	97.37	97.37
TraesCS2D01G270500.1	Wheat	endoplasmic reticulum, vacuole	97.37	97.37
TraesCS2D01G540200.1	Wheat	endoplasmic reticulum, vacuole	97.37	97.37
TraesCS5D01G009800.1	Wheat	endoplasmic reticulum, vacuole	97.37	97.37
TraesCSU01G259300.1	Wheat	golgi, vacuole	97.37	97.37
Solyc04g049240.1.1	Tomato	cytosol, plasma membrane, plastid	10.53	7.14

Protein Annotations

MapMan:1.1.1.2.6	EntrezGene:4525053	EnsemblPlants:AGP50769	EnsemblPlantsGene:AGP50769	ProteinID:AGP50769	ProteinID:AGP50769.1
ProteinID:AMA20260.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009539	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
ENA:KC912687.1:CDS:complement(61857..61973)	HAMAP:MF_01317	PFAM:PD005113	PFAM:PF02419	InterPro:PSII_PsbL	InterPro:PSII_PsbL_sf
PANTHER:PTHR33391	PANTHER:PTHR33391:SF5	GO:S4YYK3	UniProt:S4YYK3	SUPFAM:SSF161017	TMHMM:TMhelix
UniParc:UPI00000002A4	RefSeq:YP_874667.1	:	:	:	:

Description

psbLphotosystem II protein L

Coordinates

chrPt:-:61857..61973

Molecular Weight (calculated)

4497.4 Da

IEP (calculated)

4.258

GRAVY (calculated)

0.258

Length

38 amino acids

Sequence
(BLAST)

1: MTQSNPNEQN VELNRTSLYW GLLLIFVLAV LFSNYFFN

Best Arabidopsis Sequence Match ( ATCG00560.1 )
(BLAST)

1: MTQSNPNEQS VELNRTSLYW GLLLIFVLAV LFSNYFFN

Arabidopsis Description

PSBLPhotosystem II reaction center protein L [Source:UniProtKB/Swiss-Prot;Acc:P60129]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.