Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 4
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 3
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29223 | Soybean | cytosol, mitochondrion, nucleus | 58.23 | 64.49 |
| KRH24221 | Soybean | cytosol, mitochondrion, nucleus | 57.38 | 63.55 |
| Bra038239.1-P | Field mustard | plastid | 54.01 | 58.18 |
| CDY42217 | Canola | plastid | 54.01 | 57.92 |
| CDY70123 | Canola | plastid | 53.59 | 57.73 |
| GSMUA_Achr3P14110_001 | Banana | plastid | 53.59 | 55.95 |
| AT3G19900.1 | Thale cress | nucleus, plastid | 51.9 | 55.41 |
| PGSC0003DMT400082426 | Potato | plastid | 55.27 | 53.91 |
| Solyc04g009370.2.1 | Tomato | plastid | 54.43 | 53.09 |
| OQU86019 | Sorghum | plastid | 50.63 | 50.42 |
| TraesCS6B01G473400.1 | Wheat | nucleus, plastid | 47.68 | 48.5 |
| TraesCS6D01G401200.1 | Wheat | plastid | 45.57 | 47.58 |
| TraesCS6A01G416000.1 | Wheat | plastid | 45.57 | 46.96 |
| HORVU6Hr1G094410.12 | Barley | plastid | 47.26 | 41.64 |
| Os02t0829850-00 | Rice | mitochondrion | 8.44 | 25.64 |
Protein Annotations
| EntrezGene:100247903 | wikigene:100247903 | Gene3D:3.30.428.40 | MapMan:35.2 | ProteinID:CCB51178 | ProteinID:CCB51178.1 |
| InterPro:DUF3067 | UniProt:F6HGH7 | EMBL:FN595754 | EntrezGene:LOC100247903 | wikigene:LOC100247903 | PFAM:PF11267 |
| PANTHER:PTHR35126 | PANTHER:PTHR35126:SF1 | SignalP:SignalP-noTM | UniParc:UPI00021092DF | ArrayExpress:VIT_01s0010g01220 | EnsemblPlantsGene:VIT_01s0010g01220 |
| EnsemblPlants:VIT_01s0010g01220.t01 | unigene:Vvi.19141 | RefSeq:XP_002271912 | RefSeq:XP_002271912.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr1:+:16974431..16987340
Molecular Weight (calculated)
26966.1 Da
IEP (calculated)
6.781
GRAVY (calculated)
-0.426
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSFLSHAFY LFLDMTMLSG NHCNLWLGIQ NHPSRGRFNQ IICPGSGPYI PSRGSFFYHG QCLAGSSHQS ARRCRPIFSS TVDDGMDPDD SEDGIDKKQP
101: SNGELGGVNS EMIRENLERI VGSDDSTFSG LDLATLIRNK YGRSYDVLLI KKEFMGRNLL ALNVMWKYME QRSFPLTEEE YLLRLDDVAN TLKCWGAISH
201: IRNSLEKLKE RPRIGKAVSI FIDMDESGGR SNEWIYK
101: SNGELGGVNS EMIRENLERI VGSDDSTFSG LDLATLIRNK YGRSYDVLLI KKEFMGRNLL ALNVMWKYME QRSFPLTEEE YLLRLDDVAN TLKCWGAISH
201: IRNSLEKLKE RPRIGKAVSI FIDMDESGGR SNEWIYK
001: MMSIVSSHHH CQQSVIHERS GIGTISKVSC SRYCGPCFSG RLAFSHSLCL KTTYGKTDRR KFSRICSIVD DEGNLDNSDD EEKESLDDKT KRQANDMNRA
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK
Arabidopsis Description
AT3G19900 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDI1]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.