Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G473400.1 | Wheat | nucleus, plastid | 81.5 | 79.4 |
| TraesCS6A01G416000.1 | Wheat | plastid | 73.57 | 72.61 |
| HORVU6Hr1G094410.12 | Barley | plastid | 76.65 | 64.68 |
| GSMUA_Achr3P14110_001 | Banana | plastid | 49.78 | 49.78 |
| KRH24221 | Soybean | cytosol, mitochondrion, nucleus | 46.7 | 49.53 |
| KRH29223 | Soybean | cytosol, mitochondrion, nucleus | 46.7 | 49.53 |
| CDY70123 | Canola | plastid | 47.58 | 49.09 |
| CDY42217 | Canola | plastid | 47.14 | 48.42 |
| Bra038239.1-P | Field mustard | plastid | 46.7 | 48.18 |
| AT3G19900.1 | Thale cress | nucleus, plastid | 45.81 | 46.85 |
| OQU86019 | Sorghum | plastid | 48.9 | 46.64 |
| VIT_01s0010g01220.t01 | Wine grape | extracellular, vacuole | 47.58 | 45.57 |
| PGSC0003DMT400082426 | Potato | plastid | 45.81 | 42.8 |
| Solyc04g009370.2.1 | Tomato | plastid | 45.81 | 42.8 |
| Os02t0829850-00 | Rice | mitochondrion | 8.37 | 24.36 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G401200.1 | EnsemblPlantsGene:TraesCS6D01G401200 | Gene3D:3.30.428.40 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:DUF3067 | PANTHER:PTHR35126 | PANTHER:PTHR35126:SF1 |
| PFAM:PF11267 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6D:-:470602175..470602942
Molecular Weight (calculated)
25701.2 Da
IEP (calculated)
9.001
GRAVY (calculated)
-0.841
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNVLSSGHP QNLRMIHHHH QHDILLLCPR RSTINAHPPS RTRRPSSGSF RRGAVVPVRA VADDGGESSS GKDDDDEDKE EKPRKDDDEG TSSASASRRN
101: REELERLVGA PDDDGFSGLD LATLIRKRYG RSYDVTLIRK QFMGRSLLAM NVMWKYREQR SFPLTEEEYL LRLDDVANTL RSWGAVAHVR NSLETTKDRP
201: RIGKAVSIFI DVDSAGGGKR SDEWIYK
101: REELERLVGA PDDDGFSGLD LATLIRKRYG RSYDVTLIRK QFMGRSLLAM NVMWKYREQR SFPLTEEEYL LRLDDVANTL RSWGAVAHVR NSLETTKDRP
201: RIGKAVSIFI DVDSAGGGKR SDEWIYK
001: MMSIVSSHHH CQQSVIHERS GIGTISKVSC SRYCGPCFSG RLAFSHSLCL KTTYGKTDRR KFSRICSIVD DEGNLDNSDD EEKESLDDKT KRQANDMNRA
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK
Arabidopsis Description
AT3G19900 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDI1]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.