CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24221	Soybean	cytosol, mitochondrion, nucleus	95.79	95.79
VIT_01s0010g01220.t01	Wine grape	extracellular, vacuole	64.49	58.23
CDY70123	Canola	plastid	57.48	55.91
Bra038239.1-P	Field mustard	plastid	57.01	55.45
CDY42217	Canola	plastid	57.01	55.2
GSMUA_Achr3P14110_001	Banana	plastid	57.48	54.19
AT3G19900.1	Thale cress	nucleus, plastid	56.07	54.05
PGSC0003DMT400082426	Potato	plastid	58.41	51.44
Solyc04g009370.2.1	Tomato	plastid	57.48	50.62
TraesCS6A01G416000.1	Wheat	plastid	50.47	46.96
TraesCS6D01G401200.1	Wheat	plastid	49.53	46.7
TraesCS6B01G473400.1	Wheat	nucleus, plastid	50.0	45.92
OQU86019	Sorghum	plastid	50.93	45.8
HORVU6Hr1G094410.12	Barley	plastid	50.0	39.78
Os02t0829850-00	Rice	mitochondrion	9.35	25.64

Protein Annotations

EMBL:ACUP02006790	EnsemblPlants:KRH29223	EnsemblPlantsGene:GLYMA_11G104100	Gene3D:3.30.428.40	InterPro:DUF3067	PANTHER:PTHR35126
PANTHER:PTHR35126:SF1	PFAM:PF11267	ProteinID:KRH29223	ProteinID:KRH29223.1	SEG:seg	UniParc:UPI00023CBA74
UniProt:I1LIW2	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:7902525..7907403

Molecular Weight (calculated)

24488.0 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.704

Length

214 amino acids

Sequence
(BLAST)

001: MNIMSTHQCS WPVRIQDHPD KGSINKAPFS RGSEFLNVGY HAQKYGHSAR KCRPIFASSV SNSMDPSDSD DTDKKKPQNG EMGGVNSEML RESLEKIVGE
101: DDSTFSGFDL ATLIRNKYGR SYDVQLIKKE FMGRNLLAMN VMWKYMEQRS FPLTEEEYIL RLDDIANTLK CWGAVSHIRN SLEKSKERPR IGKAVSIFID
201: MDESGARSNE WIYK

Best Arabidopsis Sequence Match ( AT3G19900.1 )
(BLAST)

001: MMSIVSSHHH CQQSVIHERS GIGTISKVSC SRYCGPCFSG RLAFSHSLCL KTTYGKTDRR KFSRICSIVD DEGNLDNSDD EEKESLDDKT KRQANDMNRA
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK

Arabidopsis Description

AT3G19900 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDI1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.