CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42217	Canola	plastid	95.91	95.48
AT3G19900.1	Thale cress	nucleus, plastid	85.0	84.23
KRH29223	Soybean	cytosol, mitochondrion, nucleus	55.91	57.48
GSMUA_Achr3P14110_001	Banana	plastid	59.09	57.27
KRH24221	Soybean	cytosol, mitochondrion, nucleus	55.0	56.54
VIT_01s0010g01220.t01	Wine grape	extracellular, vacuole	57.73	53.59
PGSC0003DMT400082426	Potato	plastid	56.36	51.03
Solyc04g009370.2.1	Tomato	plastid	55.91	50.62
OQU86019	Sorghum	plastid	53.64	49.58
TraesCS6B01G473400.1	Wheat	nucleus, plastid	51.82	48.93
TraesCS6A01G416000.1	Wheat	plastid	50.45	48.26
TraesCS6D01G401200.1	Wheat	plastid	49.09	47.58
HORVU6Hr1G094410.12	Barley	plastid	51.36	42.01
CDY25356	Canola	cytosol	5.45	4.98

Protein Annotations

EnsemblPlants:CDY70123	EnsemblPlantsGene:GSBRNA2T00096560001	Gene3D:3.30.428.40	InterPro:DUF3067	PANTHER:PTHR35126	PANTHER:PTHR35126:SF1
PFAM:PF11267	ProteinID:CDY70123	ProteinID:CDY70123.1	SEG:seg	UniParc:UPI0004EDF28F	UniProt:A0A078JRB2
MapMan:35.2	:	:	:	:	:

Description

BnaCnng66810DBnaCnng66810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRB2]

Coordinates

chrLK041240:-:1278..3346

Molecular Weight (calculated)

25044.8 Da

IEP (calculated)

8.669

GRAVY (calculated)

-0.630

Length

220 amino acids

Sequence
(BLAST)

001: MMSIVSSHHH CQPSITHERC GIGTISKVSY SSPCFSGRLA FSHSLCLKST CKGQTGRRRF SRICSVVDDG MNPDNSDDEE KESPDDKSKR EANDMNRANL
101: ERMVGSDDSA FNGLDLATLI RQKYGRSYDV QLIKKEFMGR NLLAMNVMWK YREQRSFPLT EEEYILRLDD VANMLKCWGA VSHIRNSLAK SKERPRIGKA
201: VSIFIDMDST GGRANEWIYK

Best Arabidopsis Sequence Match ( AT3G19900.1 )
(BLAST)

001: MMSIVSSHHH CQQSVIHERS GIGTISKVSC SRYCGPCFSG RLAFSHSLCL KTTYGKTDRR KFSRICSIVD DEGNLDNSDD EEKESLDDKT KRQANDMNRA
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK

Arabidopsis Description

AT3G19900 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDI1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.