CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038239.1-P	Field mustard	plastid	99.55	100.0
CDY70123	Canola	plastid	95.48	95.91
AT3G19900.1	Thale cress	nucleus, plastid	83.71	83.33
GSMUA_Achr3P14110_001	Banana	plastid	59.28	57.71
KRH29223	Soybean	cytosol, mitochondrion, nucleus	55.2	57.01
KRH24221	Soybean	cytosol, mitochondrion, nucleus	54.3	56.07
VIT_01s0010g01220.t01	Wine grape	extracellular, vacuole	57.92	54.01
PGSC0003DMT400082426	Potato	plastid	55.66	50.62
OQU86019	Sorghum	plastid	53.85	50.0
Solyc04g009370.2.1	Tomato	plastid	54.75	49.79
TraesCS6B01G473400.1	Wheat	nucleus, plastid	51.58	48.93
TraesCS6A01G416000.1	Wheat	plastid	50.23	48.26
TraesCS6D01G401200.1	Wheat	plastid	48.42	47.14
HORVU6Hr1G094410.12	Barley	plastid	51.13	42.01
CDY25356	Canola	cytosol	4.98	4.56

Protein Annotations

EnsemblPlants:CDY42217	EnsemblPlantsGene:GSBRNA2T00074430001	Gene3D:3.30.428.40	InterPro:DUF3067	PANTHER:PTHR35126	PANTHER:PTHR35126:SF1
PFAM:PF11267	ProteinID:CDY42217	ProteinID:CDY42217.1	SEG:seg	UniParc:UPI0004EECDDE	UniProt:A0A078HWM0
MapMan:35.2	:	:	:	:	:

Description

BnaA01g25780DBnaA01g25780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWM0]

Coordinates

chrLK032518:-:145478..148745

Molecular Weight (calculated)

25105.9 Da

IEP (calculated)

8.282

GRAVY (calculated)

-0.610

Length

221 amino acids

Sequence
(BLAST)

001: MMSIVSSHHH CQPSFTHEQR CGIGTLSKVS YSGPCFSGRL AFSHSLCLKS SCKGETGRRR VSRICSVVDD GMNPDSSDDE EKESLDDKSK READDMNRAN
101: LERMVGSDDS AFNGLDLATL IRQKYGRSYD VQLIKKEFMG RNLLAMNVMW KYREQRSFPL TEEEYILRLD DVANMLKCWG AVSHIRNSLA KSKERPRIGK
201: AVSIFIDMDS TGGRANEWIY K

Best Arabidopsis Sequence Match ( AT3G19900.1 )
(BLAST)

001: MMSIVSSHHH CQQSVIHERS GIGTISKVSC SRYCGPCFSG RLAFSHSLCL KTTYGKTDRR KFSRICSIVD DEGNLDNSDD EEKESLDDKT KRQANDMNRA
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK

Arabidopsis Description

AT3G19900 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDI1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.