CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038239.1-P	Field mustard	plastid	50.0	54.09
CDY42217	Canola	plastid	50.0	53.85
GSMUA_Achr3P14110_001	Banana	plastid	51.26	53.74
CDY70123	Canola	plastid	49.58	53.64
AT3G19900.1	Thale cress	nucleus, plastid	48.74	52.25
TraesCS6A01G416000.1	Wheat	plastid	49.58	51.3
KRH29223	Soybean	cytosol, mitochondrion, nucleus	45.8	50.93
TraesCS6B01G473400.1	Wheat	nucleus, plastid	49.58	50.64
VIT_01s0010g01220.t01	Wine grape	extracellular, vacuole	50.42	50.63
KRH24221	Soybean	cytosol, mitochondrion, nucleus	45.38	50.47
TraesCS6D01G401200.1	Wheat	plastid	46.64	48.9
PGSC0003DMT400082426	Potato	plastid	47.9	46.91
Solyc04g009370.2.1	Tomato	plastid	47.9	46.91
HORVU6Hr1G094410.12	Barley	plastid	47.48	42.01
Os02t0829850-00	Rice	mitochondrion	8.4	25.64

Protein Annotations

EnsemblPlants:OQU86019	EnsemblPlantsGene:SORBI_3004G356400	Gene3D:3.30.428.40	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:DUF3067	PANTHER:PTHR35126	PANTHER:PTHR35126:SF1
PFAM:PF11267	ProteinID:OQU86019	ProteinID:OQU86019.1	SEG:seg	UniParc:UPI0001FCB5C3	UniProt:A0A1Z5RR25
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:68363434..68366731

Molecular Weight (calculated)

26131.8 Da

IEP (calculated)

9.654

GRAVY (calculated)

-0.666

Length

238 amino acids

Sequence
(BLAST)

001: MMNSQNLQLQ LPVQDLSLRG RSFISKPTNN KVMHHHHQCP AASSSSPPAA ARGGLQVAHP STSRRRPRAL VAVRAAGGSD DASGGESSSS GGGEEDDDGG
101: RSSWSSGGGG GLSRDDLERL VGTDDDAKFN GLDLANLIRK KYGRSYDVTL IKKEFMGRNL LAMNVMWKYR EQRSFPLSEE EYLLRLDDVA NTLKCWGAVA
201: HVRNTLEKLK ERPRIGKAVS IFIDMDQTGG RSNEWIYK

Best Arabidopsis Sequence Match ( AT3G19900.1 )
(BLAST)

001: MMSIVSSHHH CQQSVIHERS GIGTISKVSC SRYCGPCFSG RLAFSHSLCL KTTYGKTDRR KFSRICSIVD DEGNLDNSDD EEKESLDDKT KRQANDMNRA
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK

Arabidopsis Description

AT3G19900 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDI1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.