Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29223 | Soybean | cytosol, mitochondrion, nucleus | 95.79 | 95.79 |
| VIT_01s0010g01220.t01 | Wine grape | extracellular, vacuole | 63.55 | 57.38 |
| CDY70123 | Canola | plastid | 56.54 | 55.0 |
| Bra038239.1-P | Field mustard | plastid | 56.07 | 54.55 |
| CDY42217 | Canola | plastid | 56.07 | 54.3 |
| AT3G19900.1 | Thale cress | nucleus, plastid | 56.07 | 54.05 |
| GSMUA_Achr3P14110_001 | Banana | plastid | 57.01 | 53.74 |
| PGSC0003DMT400082426 | Potato | plastid | 57.94 | 51.03 |
| Solyc04g009370.2.1 | Tomato | plastid | 57.01 | 50.21 |
| TraesCS6D01G401200.1 | Wheat | plastid | 49.53 | 46.7 |
| TraesCS6A01G416000.1 | Wheat | plastid | 50.0 | 46.52 |
| TraesCS6B01G473400.1 | Wheat | nucleus, plastid | 50.0 | 45.92 |
| OQU86019 | Sorghum | plastid | 50.47 | 45.38 |
| HORVU6Hr1G094410.12 | Barley | plastid | 49.53 | 39.41 |
| Os02t0829850-00 | Rice | mitochondrion | 9.35 | 25.64 |
Protein Annotations
| EMBL:ACUP02007172 | EnsemblPlants:KRH24221 | EnsemblPlantsGene:GLYMA_12G029100 | EntrezGene:100306367 | Gene3D:3.30.428.40 | InterPro:DUF3067 |
| PANTHER:PTHR35126 | PANTHER:PTHR35126:SF1 | PFAM:PF11267 | ProteinID:KRH24221 | ProteinID:KRH24221.1 | SEG:seg |
| UniParc:UPI00023CCD6C | UniProt:I1LPL6 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr12:-:2165272..2169188
Molecular Weight (calculated)
24515.0 Da
IEP (calculated)
9.067
GRAVY (calculated)
-0.759
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIMSTHQCS WPVRIQDHPD KGSINRAPFS RGSDFLNVGY HTQKYGHSAR KCRPVFSSSV SNSTDPSDSD NTDKKKPQNG EMGGVNSEML RESLEKIVGK
101: DDSTFSGFDL ATLIRNKYGR SYDVQLIKKE FMGRNLLAMN VMWKYMEQRS FPLTEEEYIL RLDDIANNLK CWGAVSHIRN SLEKSKERPR IGKAVSIFID
201: MDESGARSNE WIYK
101: DDSTFSGFDL ATLIRNKYGR SYDVQLIKKE FMGRNLLAMN VMWKYMEQRS FPLTEEEYIL RLDDIANNLK CWGAVSHIRN SLEKSKERPR IGKAVSIFID
201: MDESGARSNE WIYK
001: MMSIVSSHHH CQQSVIHERS GIGTISKVSC SRYCGPCFSG RLAFSHSLCL KTTYGKTDRR KFSRICSIVD DEGNLDNSDD EEKESLDDKT KRQANDMNRA
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK
Arabidopsis Description
AT3G19900 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDI1]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.