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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • cytosol 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc04g009370.2.1 Tomato plastid 97.94 97.94
KRH29223 Soybean cytosol, mitochondrion, nucleus 51.44 58.41
KRH24221 Soybean cytosol, mitochondrion, nucleus 51.03 57.94
CDY70123 Canola plastid 51.03 56.36
Bra038239.1-P Field mustard plastid 50.62 55.91
AT3G19900.1 Thale cress nucleus, plastid 51.03 55.86
CDY42217 Canola plastid 50.62 55.66
VIT_01s0010g01220.t01 Wine grape extracellular, vacuole 53.91 55.27
GSMUA_Achr3P14110_001 Banana plastid 51.03 54.63
OQU86019 Sorghum plastid 46.91 47.9
TraesCS6D01G401200.1 Wheat plastid 42.8 45.81
TraesCS6B01G473400.1 Wheat nucleus, plastid 43.21 45.06
TraesCS6A01G416000.1 Wheat plastid 42.39 44.78
HORVU6Hr1G094410.12 Barley plastid 44.44 40.15
Os02t0829850-00 Rice mitochondrion 8.23 25.64
Protein Annotations
EnsemblPlants:PGSC0003DMT400082426EnsemblPlantsGene:PGSC0003DMG400032539EntrezGene:102598426Gene3D:3.30.428.40GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0009507GO:GO:0009536InterPro:DUF3067PANTHER:PTHR35126
PANTHER:PTHR35126:SF1PFAM:PF11267PGSC:PGSC0003DMG400032539RefSeq:XP_006359313.1SEG:segUniParc:UPI000296854A
UniProt:M1D5X0MapMan:35.2::::
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032539]
Coordinates
chr4:-:4945102..4951005
Molecular Weight (calculated)
27616.6 Da
IEP (calculated)
8.202
GRAVY (calculated)
-0.610
Length
243 amino acids
Sequence
(BLAST)
001: MPSTSSFWGL TTTNSAASTR MTSSLGTHPR ICSLGGGPEH IVKERSCKIS CFRYTDVESS WKELFPSKIQ KFNSFRHLNT RKCWSIFSAA TGDANDPDDS
101: EDSKNPPENE NESVNSEILR GNLERIVGRD DSAFSGIDLA ALIRNKYGRS YDVQLIKKEF MGKNLLALNV MWKYREQRSF PLTEEEYLLR LDDVANTLKC
201: WGAVSHIRNS LEKLKERPRI GKAVSIFIDM DESGGRANEW IYK
Best Arabidopsis Sequence Match ( AT3G19900.1 )
(BLAST)
001: MMSIVSSHHH CQQSVIHERS GIGTISKVSC SRYCGPCFSG RLAFSHSLCL KTTYGKTDRR KFSRICSIVD DEGNLDNSDD EEKESLDDKT KRQANDMNRA
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK
Arabidopsis Description
AT3G19900 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDI1]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.