Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022465.1-P | Field mustard | nucleus | 6.64 | 10.39 |
| CDY70123 | Canola | plastid | 4.98 | 5.45 |
| CDY42217 | Canola | plastid | 4.56 | 4.98 |
| Os02t0829850-00 | Rice | mitochondrion | 0.83 | 2.56 |
Protein Annotations
| Gene3D:3.30.428.40 | MapMan:35.2 | GO:A0A078GIZ1 | UniProt:A0A078GIZ1 | EnsemblPlants:CDY25356 | ProteinID:CDY25356 |
| ProteinID:CDY25356.1 | InterPro:CG-1_dom | InterPro:DUF3067 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00029475001 |
| InterPro:IPR005559 | PFAM:PF03859 | PFAM:PF11267 | PANTHER:PTHR35126 | PANTHER:PTHR35126:SF1 | UniParc:UPI0004EEE5AF |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g19280DBnaA05g19280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIZ1]
Coordinates
chrLK032174:-:215568..220989
Molecular Weight (calculated)
28082.7 Da
IEP (calculated)
9.778
GRAVY (calculated)
-0.649
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MLYNFSKQIY YDNCWNKKKK FDLFQNLEIH FFILQSSSGR NVIDYREKKS FTLTEEEYIL RLDIANMLKC WGAVSHICNS LAKLKERSRI LKFNILPSKR
101: LPGYCNLQEK HGDDEEVGAL IVKSKTSWLS AEEICKILKQ AESKNLTESV EKPPIDSIGL FIFREKKFYD HWRWNDVGGS KTKRGGNNRL GKKKKLSGND
201: GCSVNVTEST GLLEDNYVRR VHRDSKNFGD ELAVVHYRRL T
101: LPGYCNLQEK HGDDEEVGAL IVKSKTSWLS AEEICKILKQ AESKNLTESV EKPPIDSIGL FIFREKKFYD HWRWNDVGGS KTKRGGNNRL GKKKKLSGND
201: GCSVNVTEST GLLEDNYVRR VHRDSKNFGD ELAVVHYRRL T
001: MMSIVSSHHH CQQSVIHERS GIGTISKVSC SRYCGPCFSG RLAFSHSLCL KTTYGKTDRR KFSRICSIVD DEGNLDNSDD EEKESLDDKT KRQANDMNRA
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK
101: NLERMVGSDD SAFNGLDLAT LIRQKYGKSY DVQLIKKEFM GKNLLAMNVM WKYREQRSFP LTEEEYILRL DDVANMLKCW GAVSHIRSSL AKSKERPRIG
201: KAVSIFIDMD STGGRANEWI YK
Arabidopsis Description
AT3G19900 protein [Source:UniProtKB/TrEMBL;Acc:Q8LDI1]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.