Factsheet for VIT_13s0019g02050.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plastid	78.08	84.03
GSMUA_Achr11P...	Banana	plasma membrane, plastid	84.02	84.02
VIT_06s0004g05180.t01	Wine grape	plastid	88.36	81.99
VIT_08s0007g00840.t01	Wine grape	plastid	88.58	81.86
Bra017055.1-P	Field mustard	plastid	81.05	80.14
Solyc09g011080.2.1	Tomato	plastid	78.31	78.13
Os11t0707000-02	Rice	plastid	77.17	78.06
Zm00001d048593_P001	Maize	plastid	76.71	77.6
TraesCS4B01G140200.1	Wheat	plastid	75.8	76.85
TraesCS4D01G134900.1	Wheat	plastid	75.57	76.62
TraesCS4A01G177600.1	Wheat	plastid	75.57	76.62
GSMUA_Achr2P16450_001	Banana	plastid	82.88	76.42
EES10316	Sorghum	plastid	76.71	76.36
Solyc10g086580.1.1	Tomato	plastid	77.4	76.18
Bra000144.1-P	Field mustard	plastid	81.51	75.16
Bra005019.1-P	Field mustard	plastid	80.82	74.53
AT2G39730.1	Thale cress	plastid	80.59	74.47
TraesCS4B01G140300.1	Wheat	plastid	74.2	70.04
TraesCS4A01G177500.1	Wheat	plastid	73.97	69.83
HORVU4Hr1G027260.12	Barley	cytosol	74.2	69.74
TraesCS4D01G135000.9	Wheat	plastid	73.74	69.61
Zm00001d048592_P001	Maize	plastid	72.83	68.9
EES10317	Sorghum	plastid	73.06	67.65
VIT_09s0018g01270.t01	Wine grape	extracellular	34.7	52.78
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	18.04	39.5
Os11t0707050-00	Rice	cytosol, nucleus, plastid	6.16	37.5

Protein Annotations

Gene3D:1.10.8.1070	MapMan:1.2.1.3.2	EntrezGene:100266698	wikigene:100266698	Gene3D:3.40.50.300	InterPro:ATPase_AAA_core
ProteinID:CCB56322	ProteinID:CCB56322.1	UniProt:F6HNV2	EMBL:FN595998	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0030234	GO:GO:0043085
GO:GO:0046863	EntrezGene:LOC100266698	wikigene:LOC100266698	InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR32429
PANTHER:PTHR32429:SF12	SUPFAM:SSF52540	UniParc:UPI00015C9764	ArrayExpress:VIT_13s0019g02050	EnsemblPlantsGene:VIT_13s0019g02050	EnsemblPlants:VIT_13s0019g02050.t01
unigene:Vvi.3602	RefSeq:XP_002282979	RefSeq:XP_002282979.1	RefSeq:XP_010658538.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:-:3349030..3351310

Molecular Weight (calculated)

48017.5 Da

IEP (calculated)

5.349

GRAVY (calculated)

-0.219

Length

438 amino acids

Sequence
(BLAST)

001: MATAVSTVGA VNRALLSLNG ASGAGASVPS SAFLGSSLKK VNSRFTHSKV SSGSFKVVAE VDDDMQTEKD KWKGLAFDTS DDQQDIVRGK GMVDSLFQAP
101: MDAGTHYAVM SSYEYISTGL RQYNLDNNMD GFYIAPAFMD KLVVHITKNF MTLPNIKVPL ILGIWGGKGQ GKSFQCELVF SKMGINPIMM SAGELESGNA
201: GEPAKLIRQR YREAADIIRK GKMCCLFIND LDAGAGRLGG TTQYTVNNQM VNATLMNIAD NPTNVQLPGM YNKEENPRVP VIVTGNDFST LYAPLIRDGR
301: MEKFYWAPTR EDRIGVCTGI FRTDNVPVED IVKLVDTFPG QSIDFFGALR ARVYDDMVRD WIAGIGVDTV GKRLVNSKEG PPSFEQPKMT LEKLLEYGSM
401: LVQEQENVKR VQLADKYLNE AALGDANEDA IKSGSFFT

Best Arabidopsis Sequence Match ( AT2G39730.2 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE EKEPSK

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.