Factsheet for TraesCS4D01G134900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430
plastid: 22736107

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39730.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT2G39730.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT2G39730.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT2G39730.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT2G39730.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT2G39730.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G177600.1	Wheat	plastid	99.54	99.54
TraesCS4B01G140200.1	Wheat	plastid	98.38	98.38
Os11t0707000-02	Rice	plastid	86.34	86.14
Zm00001d048593_P001	Maize	plastid	80.56	80.37
TraesCS4D01G135000.9	Wheat	plastid	84.26	78.45
GSMUA_Achr10P...	Banana	plastid	73.84	78.38
EES10316	Sorghum	plastid	79.63	78.18
GSMUA_Achr11P...	Banana	plasma membrane, plastid	78.24	77.17
CDX93240	Canola	plastid	77.78	76.54
PGSC0003DMT400028767	Potato	plastid	77.08	76.03
Bra017055.1-P	Field mustard	plastid	77.78	75.85
VIT_13s0019g02050.t01	Wine grape	plastid	76.62	75.57
Solyc09g011080.2.1	Tomato	plastid	76.39	75.17
KRH31002	Soybean	nucleus, plastid	76.85	74.94
KRG97874	Soybean	plastid	76.39	74.49
PGSC0003DMT400049256	Potato	cytosol, plastid	74.54	73.68
CDX74838	Canola	plastid	78.94	72.86
CDY20474	Canola	plastid	78.7	72.65
GSMUA_Achr2P16450_001	Banana	plastid	79.86	72.63
CDY24950	Canola	plastid	79.63	72.42
Solyc10g086580.1.1	Tomato	plastid	74.54	72.36
Zm00001d048592_P001	Maize	plastid	77.55	72.35
CDY07640	Canola	plastid	79.4	72.21
VIT_08s0007g00840.t01	Wine grape	plastid	78.7	71.73
VIT_06s0004g05180.t01	Wine grape	plastid	77.78	71.19
Bra000144.1-P	Field mustard	plastid	78.24	71.16
Bra005019.1-P	Field mustard	plastid	78.24	71.16
EES10317	Sorghum	plastid	77.78	71.04
AT2G39730.1	Thale cress	plastid	77.55	70.68
KRH65878	Soybean	plastid	76.85	70.04
KRH73060	Soybean	nucleus, plastid	77.31	69.87
KRH15079	Soybean	nucleus, plastid	77.08	69.67
CDY68720	Canola	cytosol	17.82	64.17
CDY21872	Canola	cytosol	18.06	60.94
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	16.2	59.32
KRH55240	Soybean	cytosol	10.19	53.66
TraesCS2D01G501700.1	Wheat	plastid	42.13	40.99
PGSC0003DMT400091016	Potato	plastid	13.89	32.61

Protein Annotations

EnsemblPlants:TraesCS4D01G134900.1	EnsemblPlantsGene:TraesCS4D01G134900	Gene3D:1.10.8.1070	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR32429	PANTHER:PTHR32429:SF8
PFAM:PF00004	SUPFAM:SSF52540	MapMan:1.2.1.3.2	:	:	:

Description

No Description!

Coordinates

chr4D:+:121811802..121814973

Molecular Weight (calculated)

47786.4 Da

IEP (calculated)

7.439

GRAVY (calculated)

-0.354

Length

432 amino acids

Sequence
(BLAST)

001: MASAFSSTVG APASTPTTFL GKKVKKQAGT LNYYHGGNKI NSRVVRAMAA KKELDEGKQT DADRWKGLAY DISDDQQDIT RGKGIVDSLF QAPMGDGTHE
101: AILSSYEYIS QGLRKYDFDN TMDGLYIAPA FMDKLIVHLA KNFMTLPNIK VPLILGIWGG KGQGKSFQCE LVFAKMGINP IMMSAGELES GNAGEPAKLI
201: RQRYREAADI IKKGKMCCLF INDLDAGAGR MGGTTQYTVN NQMVNATLMN IADAPTNVQL PGMYNKEENP RVPIIVTGND FSTLYAPLIR DGRMEKFYWA
301: PTREDRIGVC KGIFRTDNVP DEAVVRLVDT FPGQSIDFFG ALRARVYDDE VRKWVGEIGV ENISKRLVNS REGPPTFDQP KMTIEKLMEY GHMLVQEQEN
401: VKRVQLADKY LSEAALGQAN DDAMATGAFY GK

Best Arabidopsis Sequence Match ( AT2G39730.3 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE V

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.