Factsheet for Bra000144.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39730.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07640	Canola	plastid	98.95	98.95
CDY24950	Canola	plastid	98.32	98.32
Bra017055.1-P	Field mustard	plastid	88.0	94.36
Bra005019.1-P	Field mustard	plastid	93.89	93.89
AT2G39730.1	Thale cress	plastid	93.05	93.25
VIT_06s0004g05180.t01	Wine grape	plastid	81.05	81.57
VIT_13s0019g02050.t01	Wine grape	plastid	75.16	81.51
VIT_08s0007g00840.t01	Wine grape	plastid	80.84	81.01
KRH15079	Soybean	nucleus, plastid	81.26	80.75
KRH73060	Soybean	nucleus, plastid	81.26	80.75
GSMUA_Achr10P...	Banana	plastid	68.84	80.34
KRG97874	Soybean	plastid	74.32	79.68
GSMUA_Achr2P16450_001	Banana	plastid	79.37	79.37
GSMUA_Achr11P...	Banana	plasma membrane, plastid	73.05	79.22
Os11t0707000-02	Rice	plastid	71.58	78.52
KRH31002	Soybean	nucleus, plastid	73.05	78.33
PGSC0003DMT400028767	Potato	plastid	72.21	78.31
KRH65878	Soybean	plastid	78.11	78.27
TraesCS4D01G134900.1	Wheat	plastid	71.16	78.24
TraesCS4A01G177600.1	Wheat	plastid	71.16	78.24
TraesCS4B01G140200.1	Wheat	plastid	70.74	77.78
PGSC0003DMT400049256	Potato	cytosol, plastid	70.95	77.12
Zm00001d048592_P001	Maize	plastid	75.16	77.11
Zm00001d048593_P001	Maize	plastid	70.11	76.91
Solyc09g011080.2.1	Tomato	plastid	70.53	76.31
EES10316	Sorghum	plastid	70.32	75.91
TraesCS4B01G140300.1	Wheat	plastid	73.68	75.43
TraesCS4D01G135000.9	Wheat	plastid	73.68	75.43
Solyc10g086580.1.1	Tomato	plastid	70.53	75.28
TraesCS4A01G177500.1	Wheat	plastid	73.47	75.22
EES10317	Sorghum	plastid	74.32	74.63
Os11t0707050-00	Rice	cytosol, nucleus, plastid	11.16	73.61
HORVU4Hr1G027260.12	Barley	cytosol	67.79	69.1
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	16.0	64.41
KRH55240	Soybean	cytosol	9.47	54.88
Bra016017.1-P	Field mustard	mitochondrion, plastid	36.21	40.86
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	16.42	39.0
PGSC0003DMT400091016	Potato	plastid	11.79	30.43

Protein Annotations

EnsemblPlants:Bra000144.1	EnsemblPlants:Bra000144.1-P	EnsemblPlantsGene:Bra000144	Gene3D:1.10.8.1070	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR32429
PANTHER:PTHR32429:SF12	PFAM:PF00004	SUPFAM:SSF52540	UniParc:UPI00025401F0	UniProt:M4C7G6	MapMan:1.2.1.3.2

Description

AT2G39730 (E=1e-261) RCA | RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator

Coordinates

chrA03:-:9534121..9536314

Molecular Weight (calculated)

51923.1 Da

IEP (calculated)

5.632

GRAVY (calculated)

-0.309

Length

475 amino acids

Sequence
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGAGAASVPA TTFLGKKVVT ASRFTQSNNK KSNGSFKVVA VKEDKQTDGD RWRGLAYDTS DDQQDITRGK GMVDSVFQAP
101: MGTGTHNAVL SSYEYISQGL KQYNLDNMMD GLYIGASFVY KLVVHITKNF LTLPNIKVPL ILGIWGGKGQ GKSFQCELVM AKMGINPIMM SAGELESGNA
201: GEPAKLIRQR YREAADMIKK GKMCCLFIND LDAGAGRMGG TTQYTVNNQM VNATLMNIAD NPTNVQLPGM YNKEENARVP IIVTGNDFST LYAPLIRDGR
301: MEKFYWAPTR EDRIGVCKGI FRTDNVKDED IVTLVDQFPG QSIDFFGALR ARVYDDEVRK FVEGLGVEKI GKRLVNSREG PPVFEQPAMT LEKLMEYGNM
401: LVMEQENVKR VQLADQYLNE AALGDANADA IGRGTFYGKA AQQVNLPVPE GCTDPQADNF DPTARSDDGT CVYNF

Best Arabidopsis Sequence Match ( AT2G39730.1 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKGA QQVNLPVPEG CTDPVAENFD PTARSDDGTC VYNF

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.