CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038128_P004	Maize	plastid	88.48	90.84
TraesCS1D01G248100.2	Wheat	plastid	80.67	81.73
HORVU1Hr1G062340.4	Barley	plastid	80.67	81.73
TraesCS1A01G248600.1	Wheat	plastid	80.3	81.66
Os05t0397700-01	Rice	plastid	81.04	80.44
TraesCS1B01G259300.2	Wheat	plastid	79.18	80.23
KRH38249	Soybean	cytosol	15.8	73.91
GSMUA_Achr3P07370_001	Banana	plasma membrane	63.57	67.59
KRH67197	Soybean	plastid	62.64	59.75
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	12.27	59.46
CDX84779	Canola	plastid	62.27	59.08
Bra022846.1-P	Field mustard	plastid	60.59	58.53
AT2G31530.1	Thale cress	plastid	62.27	58.26
CDY23936	Canola	plastid	62.08	58.19
VIT_07s0104g00040.t01	Wine grape	cytosol	63.2	55.46
Solyc09g065120.2.1	Tomato	cytosol, plastid	59.29	55.38
KRG95514	Soybean	plastid	32.34	48.2
CDY62161	Canola	golgi, plastid, vacuole	11.15	42.86
CDX84169	Canola	plasma membrane	17.29	42.27
CDX72502	Canola	cytosol, nucleus, plasma membrane	13.01	39.11
CDX92207	Canola	cytosol	12.08	28.89
CDY68266	Canola	cytosol, nucleus	12.64	27.42
Bra029080.1-P	Field mustard	mitochondrion	10.97	25.99
Bra039109.1-P	Field mustard	nucleus	13.57	25.52
CDY51931	Canola	cytosol, golgi, nucleus	11.52	24.12
EES14786	Sorghum	plastid	22.86	22.28

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.4.2	EntrezGene:8085096	UniProt:A0A1B6P859	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009526	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0010027	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0072598	InterPro:IPR023201	EnsemblPlants:KXG21937	ProteinID:KXG21937	ProteinID:KXG21937.1
PFAM:PF00344	PRINTS:PR00303	PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	EnsemblPlantsGene:SORBI_3009G129100	SUPFAM:SSF103491
unigene:Sbi.17757	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf	TMHMM:TMhelix	UniParc:UPI0003C72B9D	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:48252938..48261639

Molecular Weight (calculated)

59285.6 Da

IEP (calculated)

9.878

GRAVY (calculated)

0.259

Length

538 amino acids

Sequence
(BLAST)

001: MSPSLALAHS SLPFPSRRAL PTQLPRRLAP KHPSPCAYGL LLDGTLQRPL RTPRRLAVFA SASAASAVVP PHGEGGGGTA AGRKRTGYRN RFLDLARLGA
101: VAEGSAEAFF RSEIRRRLAV TAALIVLSRV GYFIPLPGFD RRLIPDSYLS FSPLPADDLG DFSSELKLSF FQLGISHQIS ASIVMQVLCH VLPSLEKLRK
201: EGLDGHEKLK GYIWWLSLCF ATVAAFTVSC YSLQYSVYAA SYRVKHIIIT SLLLVLGAMS MTWICDTITE SGFGHGSSLI ICVGILTGYT DTLHKMITQF
301: SGNFSYCWPY VLGVAGIFMI LTMGAVLVTE GCRKIKLQYY GFKLASGAGN ESTPVTEVEP YIPFNINPTG MQPLLTTSYL LAFPSIMASI FASPFWENLR
401: EILNPKTSTG GTPWVYYSTY AFLVFVFNIF DIANLPKEIS DYLNKMSARV PRIKPGRATV DYLTKIQTST RFWGGLLLSL LATSSLLLDR YLRQINEGFS
501: IGFTSVLIIV GSIIELRRSY QAYNVMPALS KVLRRYGA

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.