CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84169	Canola	plasma membrane	55.65	29.09
KRH67197	Soybean	plastid	93.04	18.97
GSMUA_Achr3P07370_001	Banana	plasma membrane	78.26	17.79
Bra022846.1-P	Field mustard	plastid	85.22	17.59
CDX84779	Canola	plastid	85.22	17.28
CDY23936	Canola	plastid	85.22	17.07
AT2G31530.1	Thale cress	plastid	85.22	17.04
Zm00001d038128_P004	Maize	plastid	73.04	16.03
TraesCS1A01G248600.1	Wheat	plastid	73.04	15.88
TraesCS1D01G248100.2	Wheat	plastid	73.04	15.82
TraesCS1B01G259300.2	Wheat	plastid	73.04	15.82
HORVU1Hr1G062340.4	Barley	plastid	73.04	15.82
KXG21937	Sorghum	plastid	73.91	15.8
Os05t0397700-01	Rice	plastid	73.91	15.68
KRH63143	Soybean	endoplasmic reticulum	22.61	14.53
KRG95514	Soybean	plastid	25.22	8.03
KRH54991	Soybean	plastid	26.96	5.74
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	3.48	3.6
Bra029080.1-P	Field mustard	mitochondrion	6.09	3.08
CDY62161	Canola	golgi, plastid, vacuole	1.74	1.43
CDX72502	Canola	cytosol, nucleus, plasma membrane	1.74	1.12
CDX92207	Canola	cytosol	0.87	0.44
CDY68266	Canola	cytosol, nucleus	0.87	0.4
CDY51931	Canola	cytosol, golgi, nucleus	0.87	0.39
Bra039109.1-P	Field mustard	nucleus	0.87	0.35

Protein Annotations

Gene3D:1.10.3370.10	MapMan:35.1	EMBL:ACUP02005766	EnsemblPlantsGene:GLYMA_09G121400	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	InterPro:IPR023201	UniProt:K7LDF3
EnsemblPlants:KRH38249	ProteinID:KRH38249	ProteinID:KRH38249.1	PFAM:PF00344	PANTHER:PTHR10906	PANTHER:PTHR10906:SF2
SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf	TMHMM:TMhelix	UniParc:UPI000295F8D3	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:29202686..29204090

Molecular Weight (calculated)

12745.7 Da

IEP (calculated)

10.136

GRAVY (calculated)

0.223

Length

115 amino acids

Sequence
(BLAST)

001: MVLHVDCVQD NMPKEIADYL NKMGARIPNI KPGKATIEYL SKVQASTRFW GGLLLSVLAT ASSVLDHYLR RVNAGFAIGF TSVLIIVGSI IELRRSYQAY
101: NVMPSLSNAL RRYGV

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.