CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68266	Canola	cytosol, nucleus	87.56	79.44
CDY62161	Canola	golgi, plastid, vacuole	34.67	55.71
CDY51931	Canola	cytosol, golgi, nucleus	61.33	53.7
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	20.89	42.34
CDX72502	Canola	cytosol, nucleus, plasma membrane	32.89	41.34
CDX84169	Canola	plasma membrane	15.56	15.91
CDX84779	Canola	plastid	36.44	14.46
CDY23936	Canola	plastid	35.56	13.94
AT2G31530.1	Thale cress	plastid	35.11	13.74
Zm00001d038128_P004	Maize	plastid	29.78	12.79
GSMUA_Achr3P07370_001	Banana	plasma membrane	28.0	12.45
KXG21937	Sorghum	plastid	28.89	12.08
HORVU1Hr1G062340.4	Barley	plastid	27.56	11.68
TraesCS1D01G248100.2	Wheat	plastid	27.56	11.68
Os05t0397700-01	Rice	plastid	28.0	11.62
VIT_07s0104g00040.t01	Wine grape	cytosol	31.56	11.58
TraesCS1A01G248600.1	Wheat	plastid	26.67	11.34
TraesCS1B01G259300.2	Wheat	plastid	26.67	11.3
Solyc09g065120.2.1	Tomato	cytosol, plastid	28.44	11.11
CDY13013	Canola	plastid	19.11	7.82
CDY49314	Canola	plastid	19.11	7.8
KRH38249	Soybean	cytosol	0.44	0.87

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX92207	ProteinID:CDX92207	ProteinID:CDX92207.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00153915001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:IPR023201	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF90	SMART:SM00320	SUPFAM:SSF103491	SUPFAM:SSF50978	InterPro:SecY_dom_sf	UniParc:UPI0004EE57E8
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaA05g22000D

Coordinates

chrLK031871:-:783553..785174

Molecular Weight (calculated)

25143.9 Da

IEP (calculated)

6.149

GRAVY (calculated)

-0.104

Length

225 amino acids

Sequence
(BLAST)

001: MSRNSTCIIE YKKVDTESKA RQYDDERSEF GGFGCATGKV QIIQQINHEG EVNRARYIPQ NPFVIATKTV NAEVKFKAGH LLSGSDDAQI CLWDINATPK
101: NKVIDAQQIF KAHEGVVEDV AWHMSHEHLF GSVGDDQYLL IWDLRSPSAK VEPYIPFNIN PAGMQPVLTT TYLLAFRSIL ASIVGSPFLL HVKEILNPES
201: TVGAPPWVYY SVYAFLCFSS TSLTL

Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)

001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS

Arabidopsis Description

MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.